GEISHA - A Chicken Embryo Gene Expression Database
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VIT
vitrin

Gene
Official SymbolVIT
Official Full Namevitrin
CGNC ID8037
also known asAKH, vitrin|akhirin, akhirin
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001024580
PolypeptideNP_001019751
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.22864
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human5212ENSG00000205221
Mouse74199ENSMUSG00000024076All phenotypic alleles (2):Targeted, knock-out(1) Targeted, other(1) MGI:1921449
Xenopus1004895136466688
Zebrafish497398ENSDARG00000063631ZDB-GENE-050208-114ZFIN:ZDB-GENE-050208-114
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421471
Ensembl Gene
KEGGgga:421471
GEISHA IdAkhirin.Ahsan.2005Data SourcePublication
Complete cDNA Template Probeshow
CACACCTCAAACAAGTACTCCTTACTGATCCAGACTTTGCTTCAGTCACTATGAAGGCCTCAGTCATTGCAACCTTCTT
TGGTGTACTTCTTACATGTACATATGCAGCTAAGGAAGCCACAAAGAAGACCAAAAAGGCTGAGCTATACATACCTCAG
ATTGACTGCGATGTCAAGGCTGGGAAGATAATAAATCCAGAATTCATCGCAAAATGCCCTCCAGGATGTCAAGATGTAA
AATACCGTGTTTATGGCACAGACATCTACGCTTCTTTTTCCAGTGCGTGCAGTGCTGCAATACACAGTGGTGCAATAGA
CAATACGGGTGGGAAGATCCTTGTTCAGAAGGTGGCTGGCCATGCTGGGTACCGGGGGAGCTTCTCCAATGGAGTTCGG
TCATTGTCATTGCCACGCTGGAGGGAGTCCTTCCCTGTCTCAGAGGGCAAGCCAAGAAAGGGTGTGACATATCCATCAA
CTCTTGAATTCGCTTCCTCAAAGAGCACAGCTGTTAAACCAGAGCCTAAGAAGCCAGAGCAAGACCTAAAAGTTACAAA
GAGTGCAGCCACATCTGATACATCAGGGAAAGCCTGGGAACAAGGGGACACTGTCCGCAAGGTGTATCAGACATCACCT
GTACCAATGCCAACCACACAAATGGCAGCCACAACACCAACCCCAACAACCACAACCACAGATCCTTTCAGCACAACAC
CAAAGCCAACCACAACACCTGCAACAACAAGAACCACAACAGACTCAGCTGCAGCCAAGCCTCGACCTGGACTGCAGAG
GGTCAGGGATACAGGTTCTAGCAGCGTCCACCCTGCATATTCCTCTGTGGCAGCCGCAGCATCAAGACAAGTTCAAGCT
TCACAAGGAAGAGGACTGAATAAAGCATTCAGGGGCACTTCCACCTCTGCAAGTAACAGGAATATTCTGCGACCCAATG
CAGGTATTCAGCGCCAAGAGCCCGTCGCCACCGTCCGTAGGCCTGCCGGGTCTCCAGCCCATCTGGCAATAGAAACAGA
CTTGTGGAAACCTGGACCGAGCTTTTTTGACACAGGTTTTGCTTCAAAGGAGGAACTGAACCTGAAGCCACTGGAGGCG
ACCTCCCAGGGGAACCCAAGCTGCAAGGT
CitationAhsan, M, Ohta, K, Kuriyama, S, Tanaka, H. Novel Soluble Molecule, Akhirin, Is Expressed in the Embryonic Chick Eyes and Exhibits Heterophilic Cell-Adhesion Activity. Dev Dyn. 2005 May;233(1):95-104.
CopyrightWiley-Liss, Inc. 2005
CommentsAccording to authors, "Antisense riboprobes labeled with digoxigenin (DIG) were synthesized from a pBluescript construct (SK ) containing 1,135-bp N-terminal fragment of Akhirin cDNA using T7 RNA polymerase." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # AB185956), selecting the first 1135 bases from the complete cDNA.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
Surface Ectoderm
overlying the lens vesicle
19-24
stage 20
stage 23
stage 23
Epiblast
Eye
Lens
Limb Buds
Pharyngeal Arches and Clefts
Retina
differentiating lens fiber cells
head ectoderm overlying the lens vesicle,
retinal pigment epithelium (RPE)
25-30
stage 29
stage 29
stage 29
Eye
Face Mesenchyme
Lens
Retina
all neural layers of retina
differentiating lens fiber cells
extra ocular expression
lens epithelium cells
presumptive retinal margin
31-44
stage 35
stage 35
stage 39
stage 39
stage 39
stage 44
Eye
Lens
Retina
Surface Ectoderm
around the equator region
ciliary margin
ganglion cell layer (GCL)
inner nuclear layer (INL)
presumptive retinal margin
retinal margin
section K is from postnatal day 1 chick
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.22864

Mouse

EmageMGI:1921449
EurexpressMGI:1921449
MGI GXDMGI:1921449

Frog

Xenbase6466688

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050208-114
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