GEISHA - A Chicken Embryo Gene Expression Database
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AFDN
afadin, adherens junction formation factor

Gene
Official SymbolAFDN
Official Full Nameafadin, adherens junction formation factor
CGNC ID51504
also known asMLLT4, afadin|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_419605
PolypeptideXP_419605
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.54416
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly40620FBgn0259212
Human4301ENSG00000130396MIM:159559
Mouse17356ENSMUSG00000068036All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(3) MGI:1314653
Xenopus100493083, 496308948332
Zebrafish558359ENSDARG00000029472ZDB-GENE-050419-52, ZDB-GENE-130530-932ZFIN:ZDB-GENE-050419-52, ZFIN:ZDB-GENE-130530-932
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene421564
Ensembl Gene
KEGGgga:421564

Entry 1

GEISHA IdChEST127p23Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCCAGACATGCGCTTGTTGTCATCCCCTAAATACTCGCTCTATGAGGTGCATGTCAGTGGAGAAGAAAGAAGATTAGAT
GTGGATGAGAAGCCTCTTGTTGTACAATTAAACTGGAACAAAGATGATCGAGAAGGAAGGTTTGTTCTCAAGAATGAAA
ATGATACGCTTCCTCCAAAGAAGGCTCAGAGTAATGGCCCTGAAAAACAAGAAAAAGAAGGAGTAATACAGAATTTCAA
ACGAACTCTCTCAAAGAAAGAAAAGAAAGAGAAGAAGAGGCGTGAAAAAGAGGCATTGCGACAAGCATCAGATAAAGAT
GATCGACTTCTTCATGGGGATGATATTGAGAATTCTCGCCTTGCAGCTGAGGTTTACAAAGATATGCCTGAGACCAGCT
TCACTCGCACAATATCTAATCCTGAGGTGGTTATGAAACGACGGCGGCAGCAAAAACTAGAGAAGAGAATGCAGGAATT
TCGCAGTTCTGATGGCAGACCAGACTCAGGTGGGACGCTGAGAATTTATGCGGACAGTTTAAAACCAAATATACCATAC
AAGACAATCCTGTTGTCAACTACAGATACTGCAGACTTTGCAGTTAGTGAAGCACTGGAGAAATACGGCTTGGAGAAGG
AAAACCCCAAGGATTATTGTATTGCTCGTGTCATTCTGCCTCCTGGTGCTCAGCACTCTGATGATAAAGGTGCTAAAGA
AACTATTCTAGATGATGATGAGTGTCCACTTCAGATATTCAGGGAATGGCCTAGTGATAAAGGAATACTAGTCTTTCAG
TTTGAAAGGCGGCCTCCTGATTATGTCCCAAAGAAATCCAAGAAAAAGCTGATGGAAAGCCTTTAAGGGGAAAGAAAAA
TTGACGGGCTGGCTTCGGCTCTTGCCTTCTTCTGAAAAACTACCAAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 12
stage 12
Endoderm
Intermediate Mesoderm
Lateral Plate Mesoderm
Notochord
Sinus Venosus
Surface Ectoderm
 
13-18
stage 17
stage 17
stage 18
Amnion
Proepicardium
 
19-23
stage 20
stage 22
stage 23
Allantois
Amnion
Surface Ectoderm
 

Entry 2

GEISHA IdMLLT4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5'-GCAAACTCGCCGACATCATC-3'
Reverse cDNA Template Primer5'-AATTAACCCTCACTAAAGGAATTCTCAGCGTCCCACCTG-3'cDNA Template Length728
Complete cDNA Template Probeshow
GCAAACTCGCCGACATCATCAACCACTGGAACGCGAACCGGCTGGACCTGTTCGAGATCAGCGCCCCCACCGAGGATTT
GGAATTTCATGGTGTAATGAGATTTTACTTTCAAGACAAAGCAGCTGGAAACTTTGCAACAAAATGTATCCGTGTCTCA
AGTACTGCCACAACTCAGGATGTGATAGAGACTCTTGCAGAGAAGTTCCGGCCAGACATGCGCATGTTGTCATCCCCTA
AATACTCGCTCTATGAGGTGCATGTCAGTGGAGAAGAAAGAAGATTAGATGTGGATGAGAAGCCTCTTGTTGTACAATT
AAACTGGAACAAAGATGATCGAGAAGGAAGGTTTGTTCTCAAGAATGAAAATGATACGCTTCCTCCAAAGAAGGCTCAG
AGTAATGGCCCTGAAAAACAAGAAAAAGAAGGAGTAATACAGAATTTCAAACGAACTCTCTCAAAGAAAGAAAAGAAAG
AGAAGAAGAGGCGTGAAAAAGAGGCATTGCGACAAGCATCAGATAAAGATGATCGACTTCTTCATGGGGATGATATTGA
GAATTCTCGCCTTGCAGCTGAGGTTTACAAAGATATGCCTGAGACCAGCTTCACTCGCACAATATCTAATCCTGAGGTG
GTTATGAAACGACGGCGGCAGCAAAAACTAGAGAAGAGAATGCAGGAATTTCGCAGTTCTGATGGCAGACCAGACTCAG
GTGGGACGCTGAGAATT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Unlabeled
 
7-12
stage 8
stage 8
stage 10
stage 10
Anterior/Second Heart Field
Atria
Ectoderm
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Pharynx
Sinus Venosus
 
13-18
stage 17
Head Mesenchyme
Liver
Lung
Pharyngeal Arches and Clefts
Proepicardium
 
19-24
stage 20
stage 22
stage 23
stage 23
stage 23
stage 23
stage 23
stage 24
Anterior/Second Heart Field
Aorta
Forebrain
Foregut
Gizzard
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Liver
Lung
Mesonephros
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Proepicardium
Sclerotome
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Stomach
Ventricles
Wing Mesenchyme
 
25
stage 25
stage 25
stage 25
stage 25
Foregut
Gizzard
Liver
Lung
Mesonephros
Myotome
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.54416

Mouse

EmageMGI:1314653
EurexpressMGI:1314653
MGI GXDMGI:1314653

Frog

Xenbase948332

Fruit Fly

BDGPFBgn0259212

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050419-52, ZDB-GENE-130530-932
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