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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HDAC8
histone deacetylase 8

Gene

Official Symbol	HDAC8
Official Full Name	histone deacetylase 8
CGNC ID	3582
also known as	histone deacetylase 8, Histone deacetylase 8 (HD8), HDAC8
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_420178
Polypeptide	XP_420178

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	55869	ENSG00000147099		MIM:300269
Mouse	70315	ENSMUSG00000067567	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:1917565
Xenopus	100145561, 444137			5863425
Zebrafish	406740	ENSDARG00000003021	ZDB-GENE-040426-2772	ZFIN:ZDB-GENE-040426-2772

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422182
Ensembl Gene	ENSGALG00000004825
KEGG	gga:422182

Entry 1

GEISHA Id	ChEST552d17	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GGATCTTCGACTACGCAGCAGCCGTGGGGGGAGCCACCATCACCGCAGCCCAGTGCCTGCTGGATGGCAAGTGCAAGGT AGCAATTAACTGGCCTGGAGGGTGGCATCACGCAAAGAAAGATGAAGCTTCTGGTTTTTGTTACCTGAATGATGCTGTC CTGGGGATCCTGCGACTGCGCCAGAAATTTGACCGCATCCTTTATATTGATTTGGATTTGCATCATGGGGATGGTGTTG AAGATGCCTTTAGCTTCACCTCGAAGGTCATGACTGTTTCTCTGCACAAGTTTTCGCCAGGATTTTTCCCAGGCACAGG GGATGTGACAGATATTGGCCTGGGGAAAGGTCGCTATTACAGTGTGAATGTGCCTATCCAAGATGGCATTCAAGATGAG AAATATTACCAGATCTGTGAAACTGTGCTGAAGGAGGTGTACGCTGCCTTCAACCCTGAGGCAGTGGTGCTACAGCTGG GGGCTGACACCATTGCTGGAGACCCCATGTGCTCCTTCAACATGACGCCCGAGGGAGTGGGCAAGTGCCTGAAGTACGT CCTGCAGTGGCAGCTGGCAACTCTCATCCTGGGAGGAGGAGGCTACAACCTTGCCAACACAGCCCGCTGCTGGACGTAC TTGACTGGGGTCATCCTTGGCAGAACGCTGTCCTCTGAGATCCCTGATCATGAGTTCTTCACATAATATGGTCCTGACT ACAT
Comments	No specific expression detected, stages 6-22, widespread or ubiquitous.

no images

Entry 2

GEISHA Id	HDAC8.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	ATCTTTGACTACGCAGCAGCCG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTGAGCCTTCCCTTCTCCACTAAAC	cDNA Template Length	831
Forward cDNA Template Probe	show CCTTCAGATTGCCTTTGATCAAGTTGAAGAATTTCTTGGAATTCTCTGTGGATCGTTGCGGTCCGGGTCTGCAACTGGG TGTGATCTCCAGCACGTAGTCAGGACCATACTCTGTGAAGAACTCATGATCAGGGATCTCAGAGGACAGCGTTCTGCCA AGGATGACCCCAGTCAAGTACGTCCAGCAGCGGGCTGTGTTGGCAAGGTTGTAGCCTCCTCCTCCCAGGATGAGAGTTG CCAGCTGCCACTGCAGGACGTACTTCAGGCACTTGCCCACTCCCTCGGGCGTCATGTTGAAGGAGCACATGGGGTCTCC AGCAATGGTGTCAGCCCCCAGCTGTAGCACCACTGCCTCAGGGTTGAAGGCAGCGTACACCTCCTTCAGCACNGTTTCA CAGATCTGGTAATATTTCTCATCTTGAATGCCATCTTGGATAGGCACATTCACACTGTAATAGCGACCTTTCCCCAGGC CAATATCTGTCACATCCCCTGTGCCTGGGAAAAATCCTGGCGAAAACTTGTGCAGAGAAACAGTCATGACCTTCGAGGT GAAGCTAAAGGCATCTTCAACACCATCCCCNTGATGCAAATCCAAATCAATATAAAGGATGCGGTCAAATTTCTGGCGC AGTCGCAGGATCCCCAGGACAGCATCATTCAGGTAACAAAAACCAGAAGCTTCATCTTTCTTTGCGTGATGCCACCCTC CAGGCCAGTTAATTGCTACCTTGCACTTGCCATCCAGCAGGCACTGGGCTGCNNTGATGGTGGCTCCCCCCACGGCTGC TGCTA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Area Pellucida

4-6

stage 4

stage 5

stage 6

Area Pellucida
Early Endoderm
Early Mesoderm
Extraembryonic Mesoderm
Hensen's Node
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 11

Anterior Intestinal Portal
Blood Islands
Extraembryonic Mesoderm
Head Mesenchyme
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Primitive Streak
Somites

13-18

stage 15

stage 16

Dermomyotome
Eye
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord

situs inversis

19-24

stage 20

stage 21

stage 22

stage 24

Ear/Otic Placode
Eye
Forebrain
Foregut
Gut
Heart
Hindbrain
Leg Mesenchyme
Liver
Mesonephros
Midbrain
Myotome
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

Entry 3

GEISHA Id	HDAC8.Murko.2010	Data Source	Publication
Complete cDNA Template Probe	show `AGATATTGGCCTGGGGAAAGGTCGCTATTACAGTGTGAATGTGCCTATCCAAGATGGCATTCAAGATGAGAAATATTAC CAGATCTGTGAAACTGTGCTGAAGGAGGTGTACGCTGCCTTCAACCCTGAGGCAGTGGTGCTACAGCTGGGGGCTGACA CCATTGCTGGAGACCCCATGTGCTCCTTCAACATGACGCCCGAGGGAGTGGGCAAGTGCCTGAAGTACGTCCTGCAGTG GCAGCTGGCAACTCTCATCCTGGGAGGAGGAGGCTACAACCTTGCCAACACAGCCCGCTGCTGGACGTACTTGACTGG`
Citation	Murko C, Lagger S, Steiner M, Seiser C, Schoefer C, Pusch O. Expression of class I histone deacetylases during chick and mouse development. Int J Dev Biol. 2010;54(10):1527-37.
Copyright	Reprinted from Int. J. Dev. Biol., 55(1), Copyright (2010), with permission from the authors and IJDB