GEISHA - A Chicken Embryo Gene Expression Database
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SPARCL1
SPARC like 1

Gene
Official SymbolSPARCL1
Official Full NameSPARC like 1
CGNC ID8304
also known asSPARC-like protein 1|SPARC-like 1 (hevin)|SPARC-like 1 (mast9, hevin)
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Sequence Information
Genomic
RNAXM_420545
PolypeptideXP_420545
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human8404ENSG00000152583MIM:606041
Mouse13602ENSMUSG00000029309All phenotypic alleles (1):Targeted, knock-out(1) MGI:108110
Xenopus
Zebrafish567331ENSDARG00000074989ZDB-GENE-060130-6ZFIN:ZDB-GENE-060130-6
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422586
Ensembl Gene
KEGGgga:422586
GEISHA IdQR1.Chittka.2009Data SourcePublication
Complete cDNA Template Probeshow
ATGAAGACTGTAGTGCTCCTGATTTGTCTTCTAGGATCTGCTTTCACCACTCCCACCTATCCCTGGAACTACCAATTTG
GGGCCCATGGACAGAAAACTGCAGAGAATACTAAATATACTCATTCTGAAACCCCAGAGGAAGAGAACACAGGGTCTGT
AAACAAAGGTGATGTGCCGTCTGGCCACAGGGCCATAAAAGCAGAAGTACCGGTACTAGATACACAGAGGGATGAGCCC
TGGGCTGCCAGAAGACAAGGACGAGGTGATGGTGAGCATCAAACCAAAAACAGCCTGAGGAGCATCAACTTCCTTACTC
TGCACAGTAATCCGGGCTTGGCTTCTGAGAACCGGGAAAGCAACTCTGGCAGCAGCAGGGAACAGCCCAGCTCTGAGCA
CCACCAGCCCAGGAGGCACAAGAAGCACAGCAACACGGCTGGTCAGCGGGCTCTGAGAGGAGAAAGTCCAGTGGATGCT
CTTGGTCTCGTTCGTGAGCTCAACACATGGAAATACAATAAAAACGCAATTGGCTTAGATGAAAGCAACAGTGAAAGCG
ACGAAGAAGAAGGTGGGGAGGAAGAAGATGAGGAATGGGGTGAAGAAACTGATTATAGGGATACAAAGCACAGAGCCCA
CGGGACAAGCCATGGAAGCCAATACAGGAGATGGCAAAATGAATACAGCCGGCCATCCGGTGAATTCTTGAGAGATTCC
AGTCTGCCGATGCATATAACCAAGAGACACAGTGAGAAATTTGGCATAGAGGATGAAAGTCAGGAAAAGCCCTACAGGG
AAGGAAAACTCCCTCTCTCAAAGAAAAGTCATAATGAGGATCGAGGTGAAAAAAGACAAAGCCAAGAAAGCAAAGACCA
GTTTGAAGTAAACAATCAGCGCAAACATGAAGCAGTGATGAAAACGCAGGATAAGGAGGGCAGCAATGCTGAGGAGGAT
GATAATGATAGCGGTGATGATGGTGAGGAAGATCTCAGCAATGTCTGGAGGGAAGCAGTCTATGAGGAAGAGGAGAGAA
TGCAAAGCAATGACCAGGACAGCATCAGCAACAAGCAAAAAGAGGAAGGAACCGCTGGAGATGACAGTGGAGTTTATAG
GGAGATGCAGGATTACCAGGGTGACAAAATTAAAGACGTTACTCACTCCAAAGAGCATCATTACCACCATGAGCCACCT
AATTCCAGCAGCAAGCGACAACTGCAAACAAGTAGCTCTGCTGAGAGCATGAATTCAACGGAACATGAGGATGAGGTTA
AGACCACGGGAGGTTCACATAATGAGGAAAGTGCAAGGAACAGCACTGGGAAGGCTCTCCTGGATCTTTGTAGGAACTT
CCACTGCAAAAGAGGAAAAGTCTGCCAAGAAGACAAGCAGGGGAAACCCAGCTGTATTTGCCAAGATCCTGCTGCTTGC
CCTTCCACCAAAGATTATGAGCGTGTCTGTGGCACGGATAATAAGACTTATGATGGCACATGCCAACTCTTTGGCACCA
AATGTCAACTTGAAGGGACAAAAATGGGACGCCAGCTGCACCTAGACTATATGGGTGCCTGCAAATACATACCCCACTG
TACCGATTATGAAGTGGATCAGTTCCCTCTCCGTATGAGAGACTGGCTCAAAAACATCCTTATGCAATATTACGAACGC
GATCAGGGTACGCCTGGGTTTCTAACTGAAAAGCAAAGGAATAAGGTCAAAAAAATATACCTGAATGAGAAACGTCTTG
TGTCTGGTGAGCACCCAGTTGAGCTTCTCCTGCATGACTTTGAGAAAAACTACCACATGTATGTGTATCCTGTGCACTG
GCAATTTTATCAGCTTGACCAGCACCCAGTTGACAGATCACTGACGCACTCAGAGCTCGCTCCTTTGAGAGCCTCCCTC
GTTCCCATGGAACACTGCATAACCCGTTTCTTCCAGGAGTGTGATGGAGACCAAGACAAACTTATCACTCTGAAGGAGT
GGTGCCGCTGTTTTGGGATTAAGGAAGAAGACATAAATGAAAGTCTCCTGTTCTGAGCCCGGCTAAGCAGAATCCCTGT
GCAGCGCTACAGCTTGACAAACATGTGATGCCCGTTTATGACTGCAATTAACAGCTCTGTAATTTTCAGGAATAAGTTG
GCAGAAGATTCTTGGAGGCAGAATGAGTTACTCTTGGATAACACAAGTGCCTAATTGTTGCAAATTCATTAACAGCCGT
AGTGTTTAAGAACTCCAAGTAGCTCATACCTAAACAGTGTTTTCCTCTGCATGTACCAATAATCTCTTAGTAGGACTAA
CCTGACGACTGAGTTGTTCACAAAACCCTTCAGTAGAACTGTAGGATGTGGATTTTATAATACACCGAAGAAAACTACT
TTGAAATAGGTTTTCTTTTCTTGTCATTTACTGTCAGTTTAGCACTCTGCATAGAAATGTCAAATAAACAAAGTCTACC
CAGATTTT
CitationChittka A, Volff J, Wizenmann A. Identification of genes differentially expressed in dorsal and ventral chick midbrain during early development. BMC Dev Biol. 2009 Apr 27;9:29.
CopyrightCopyright © 2009 Chittka et al; licensee BioMed Central Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XP_420545).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 8
stage 10
stage 12
Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
 
19-20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
Hindbrain
Lens
Midbrain
Retina
Spinal Cord
Note that the tail region of the spinal cord lacks expression of QR1 at HH20.

Mouse

EmageMGI:108110
MGI GXDMGI:108110

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-060130-6
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