GEISHA - A Chicken Embryo Gene Expression Database
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PDLIM5
PDZ and LIM domain 5

Gene
Official SymbolPDLIM5
Official Full NamePDZ and LIM domain 5
CGNC ID51807
also known asPDZ and LIM domain protein 5, PDLIM5
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001031149
PolypeptideNP_001026320
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.6787
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human10611ENSG00000163110MIM:605904
Mouse56376ENSMUSG00000028273All phenotypic alleles (2):Targeted, other(2) MGI:1927489
Xenopus548530, 100101292854113
Zebrafish393165, 436927ENSDARG00000027600, ENSDARG00000038267ZDB-GENE-040426-908, ZDB-GENE-040718-401ZFIN:ZDB-GENE-040426-908, ZFIN:ZDB-GENE-040718-401
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422699
Ensembl GeneENSGALG00000012211
KEGGgga:422699

Entry 1

GEISHA IdChEST458h21Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCGGCTCGAGGAGGGACGGAGCTGCTGCCTGGCAGACGCGCCGCGGGTGTCTTCGTCGCTCCGCGCCCCGCAGCGCTGG
GCTGGGCATCAAGTCCTTGGCTTGGATCCTTGAATACTGAACACCATGAGCAACTACAGCGTGTCTCTGGTCGGCCCGG
CTCCTTGGGGTTTCAGGCTTCAAGGTGGCAAGGATTTCAACATGCCCCTGTCCATCTCTCGGCTTAACGACGGTGGAAA
AGCAGCCCGAGCAAACGTGGGGATTGGTGACGTGGTTCTCACCATTGATGGGATAAGTACAGACAGGATGACTCATCTA
GAAGCACAAAACAAGATCAAGGCATGTACAGGCAATCTGAACATGACTTTGCAAAGAGTGGCTTCTGCAACAAAACCTG
ATATTATTCATGTACCAAAGCCTGCCACGCACAATGCCGCCCCGGGCGGCCATGTCGGCGACAGCACCCAGGAGCTAGC
GGAGGGGCTGCGACGAGGATTCAGAGAGAACCAGGTGACAATAAACAGCAAAATGGGAAAATCCCACCCAAACGCCCCC
CACGAAAGCACATTGTGGATACCTATACGGAGTTCTATCACACCCCTACTCACAGCGATGCCAGCAAGAAGCGGCTGAT
TGAAGATACTGAAGACTGGCATCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 5
stage 6
Area Opaca
Germinal Crescent
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 9
stage 9
stage 10
stage 11
stage 12
Atria
Blood Vessels
Head Mesenchyme
Heart Tube
Oral Pharynx
Paraxial Mesoderm
Rhombomeres
Sinus Venosus
Somites
Ventricles
Yolk Sack or Stalk
xs
13-18
stage 14
stage 17
stage 18
Ear/Otic Placcode
Head Mesenchyme
Pharyngeal Arches and Clefts
Sinus Venosus
 
19-20
stage 19
stage 20
stage 20
Atria
Sinus Venosus
Somites
Ventricles
 

Entry 2

GEISHA IdPDLIM5.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CTCTGATAGGCCTGCAGGGTACAGAGGTTTTTACAAAGCAATGAAGAGTAGGTGGCTATGCTAGCAAACAGGAGTGACT
TAGAAGAGGCCACTTGAAAGAAAGCGTAGATGGGATACCATTCCTGACATCATGGCGTGTACTACCAGAACACTAGCCA
AAACAAAGTGCTAGTTGAGGTGCATTTGACAAGACAGAAATGTCAGATCAGATCTTCAGTATAAGGAAGTGAGAGTTAT
ACTCTTCTGTTCACAGCTGAAGTTCTAGGAAGTTTTCAGTGCCTCGGAAAGGAAATCACATTGAATCTACGCATAACAG
TGCTTATAACTTGAATGTGATGCTTGGTGTTTAATGAGGGAAACTTCTGAGGACAGAAGGTCCTCAGGTGCAACTGAGG
ACATTACTTTTCTCTCAGTACATTCTTTATGATGTAGCTCATAAATATGTATATTGGTGGTGTGCCAGGTAGTGTACTG
AAAACTGATTTTCTTGCTCAGCTGTTACGATTTTTATTCGTTTGCTTTTTTCTCTCCTTTCCAGCAGATGCAAGGAATA
TATTGTTAAATAATGTAACATTGAGTTAGGCAGTCCAGTATTTCTCAGTTGTTGCAGGGGAAAGTAGACAATACTGCCA
TTATGCATTTATGCAAGCCAAGAGATTTTGCCAATCCTGTGGCTTTGTATGAATTTCACTTCCACCACAGAGGGTCAGC
AGGAGACCTGTGCACCAGTTAAGTCCCACTTTGTCTTCCCAATTAGGGCTCAATGGTATTGGAGTAGTACGTAAGCTTA
TAGGGGGAGGGGTAATGACCCTCTGCACGAGGTGGACTTACTCCG
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Opaca
Area Pellucida
 
1-3
stage 3
Primitive Streak
primitive streak
4-6
stage 4
Head Process
Paraxial Mesoderm
Primitive Streak
primitive streak / head process / prechordal mesendoderm
7-9
stage 9
Neural Plate/Tube
Somites
anterior neural plate / somites
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.6787

Mouse

EmageMGI:1927489
EurexpressMGI:1927489
MGI GXDMGI:1927489

Frog

Xenbase854113

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-908, ZDB-GENE-040718-401
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