GEISHA - A Chicken Embryo Gene Expression Database
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PCDH7
protocadherin 7

Gene
Official SymbolPCDH7
Official Full Nameprotocadherin 7
CGNC ID51827
also known asprotocadherin-7|BH-protocadherin (brain-heart)
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_420748
PolypeptideXP_420748
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.17890
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human5099ENSG00000169851MIM:602988
Mouse54216ENSMUSG00000029108MGI:1860487
Xenopus100124985, 1003375801007356
Zebrafish555504ENSDARG00000060610ZDB-GENE-081104-299, ZDB-GENE-120206-1, ZDB-GENE-081104-299ZFIN:ZDB-GENE-081104-299, ZFIN:ZDB-GENE-120206-1, ZFIN:ZDB-GENE-081104-299
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422797
Ensembl Gene
KEGGgga:422797

Entry 1

GEISHA IdPCDH7.Lin.2012Data SourcePublication
Complete cDNA Template Probeshow
TCTTCGAGGGCCGGGTCATCATCCTGGACATCAACGACAACACCCCCACCTTCCCTTCTCCTGTCCTCACGCTCACCGT
GGAGGAGAACCGGCCCGTGGGGACCCTCTACCTACTCCCCACCGCCACCGATAGGGATTTCGGCCGCAACGGCATCGAG
CGCTACGAGCTGCTTCAGGAGCCCGGCGGGGACGGGGGACGGCGCGGCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGCG
GCGGCGGCGGCGGGGGCGGTGCGGCGGCGGCCGGCCCGGAGAGCGCCCTCTACCCCAGCGGCAGCAAGCGGAGGCAGGA
AGCGGAGGCCCGCAGCAGCGTGTTTGAGCTGCAGGTGGCCGACACCCTGGACGGGGAGAAGCAACCGCAGCTGATCGTC
AAGGGGGCGCTAGACCGGGAGCAGCGGGACTCCTACGAACTGAGCCTGCGCGTGCGCGACGGCGGCGAGCCCGCGCGTT
CCTCGCAGGCCATCTTGCGGGTGCTGATCACCGACGTGAACGACAACAGCCCCCGCTTCGAGAAGAGTGTCTACGAGGC
CGACCTGGCGGAGAACAGCAGCCCCGGGACCCCTATCCTGCAGCTGCGAGCCGCTGACCTGGATGTAGGGGTGAACGGG
CAAATCGAGTATGTCTTTGGGGCAGCCACTGAGTCAGTGAGGCGGCTGCTGCGGCTGGATGAGACCTCAGGCTGGCTTA
GTGTCCTGCACCGCATTGACCGTGAGGAGGTTAACCAGCTGCGCTTCACCGTGATGGCCCGGGACCGTGGGCAGCCCCC
TAAGACAGACAAGGCCACGGTGGTGCTGAACATCCGTGATGAGAATGACAATGTGCCCACCATCGATATCCGAAAGATT
GGGCGCATCCCACTACGGGATGGAGTGGCCAGCGTGGCTGAGGACGTGCTGGTGGATACCCCCATTGCCCTGGTGCAGG
TGTCAGACCGGGACCAAGGCGAAAATGGTGTGGTGACCTGCACTGTGGTGGGAGATGTGCCCTTTCAGCTCAAGCCAGC
CAGTGAGGGTGAAGGGGAGCCACAGAACAAGCGCAAGTACTTCCTCCACACCTCAGCCCCTCTGGACTATGAGGCAGTG
CGTGACTACAATGTGGTGATCGTAGCCGTGGACTCAGGCAGCCCTAGCTTGTCCAGCAACAACTCCTTGCTGGTGCGGG
TCGCAGACACTAATGACAACCCTCCTGTGTTTGGCCAGGCTGTACTGGAGGTCTCTTTCCCAGAGAACAATCTGCCTGG
TGAGAGGGTGGCCACGGTGGTGGCCACAGATGCGGACAGCGGCAAGAATGCTGAGCTCACCTACTCCCTGGAGCCCTCA
CCCCTCTCCTCGGAGTCACCGAGCGGCATCTTCAGCATTGACCCTGACTCTGGGGATGTGTCTGTGCAGGTGGTGCTGG
ACCGTGAGCAGCGTGACACCTATGAGTTCCAAGTGACGGCCCGAGACAAGGGGGTACCATCACTGCAGGGCTCCACCAT
GGTGGTGGTGCGGGTGGCGGATCGCAATGACAATGAACCGCGCTTCATGCAGGATGTGTTCACTTTCTATGTGAAGGAG
AACCTGCAGCCCAACAGCCCCGTGGGCATGGTGACTGTGATGGACTTTGACAAGGGGCGCAATGCTGAGCTCAGCCTCT
CCATACAGCCCAGTGAACATGACCAGGCAACTGGCATCTTCTCTATTGAAAATGACACAGGAACAATCTACTCCACAGT
CTCATTTGACCGGGAGCAGCAGACCAGCTACACCTTCAAAGTGAAGGCTGTGGATGGGGGTGA
CitationLin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
CopyrightCopyright © 2011 Wiley Periodicals, Inc.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described in the paper.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Spinal Ganglia and Nerves
 
19-24
stage 20
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
Notochord
Spinal Cord
Cdh7: green
Pcdh7: red
Pcdh8: green
25-30
stage 29
stage 29
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
stage 30
Spinal Cord
Spinal Ganglia and Nerves
Cervical section of the spine.
Higher magnification of boxed area in D.
Higher of magnification of boxed area in G.
Immunostaining: Islet1 in red
In situ hybridization: PC7 in green
PC7: green fluorescence
Sacral section of the spine.
Thoracic section of the spine.
dh, dorsal horn
31-36
stage 34
stage 34
stage 36
stage 36
Spinal Cord
Spinal Ganglia and Nerves
Higher magnification of boxed area in I.
Higher magnification of boxed area in K.
gm, gray matter
lm, lateral motor column

Entry 2

GEISHA IdPCDH7.Lin.2013Data SourcePublication
Complete cDNA Template Probeshow
TCTTCGAGGGCCGGGTCATCATCCTGGACATCAACGACAACACCCCCACCTTCCCTTCTCCTGTCCTCACGCTCACCGT
GGAGGAGAACCGGCCCGTGGGGACCCTCTACCTACTCCCCACCGCCACCGATAGGGATTTCGGCCGCAACGGCATCGAG
CGCTACGAGCTGCTTCAGGAGCCCGGCGGGGACGGGGGACGGCGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCGGCG
GTGGCGGCGGCGGCGGGGGCGGTGCGGCGGCGGCCGGCCCGGAGAGCGCCCTCTACCCCAGCGGCAGCAAGCGGAGGCA
GGAGGCGGAGGCCCGCAGCAGCGTGTTTGAGCTGCAGGTGGCCGACACCCTGGACGGGGAGAAGCAACCGCAGCTGATC
GTCAAGGGGGCGCTAGACCGGGAGCAGCGGGACTCCTACGAACTGAGCCTGCGCGTGCGCGACGGCGGCGAGCCCGCGC
GTTCCTCGCAGGCCATCTTGCGGGTGCTGATCACCGACGTGAACGACAACAGCCCCCGCTTCGAGAAGAGTGTCTACGA
GGCCGACCTGGCGGAGAACAGCAGCCCCGGGACCCCTATCCTGCAGCTGCGAGCCGCTGACCTGGATGTAGGGGTGAAC
GGGCAAATCGAGTATGTCTTTGGGGCAGCCACTGAGTCAGTGAGGCGGCTGCTGCGGCTGGATGAGACCTCAGGCTGGC
TTAGTGTCCTGCACCGCATTGACCGTGAGGAGGTTAACCAGCTGCGCTTCACCGTGATGGCCCGGGACCGTGGGCAGCC
CCCTAAGACAGACAAGGCCACGGTGGTGCTGAACATCCGTGATGAGAATGACAATGTGCCCACCATCGATATCCGAAAG
ATTGGGCGCATCCCACTACGGGATGGAGTGGCCAGCGTGGCTGAGGACGTGCTGGTGGATACCCCCATTGCCCTGGTGC
AGGTGTCAGACCGGGACCAAGGCGAAAATGGTGTGGTGACCTGCACTGTGGTGGGAGATGTGCCCTTTCAGCTCAAGCC
AGCCAGTGAGGGTGAAGGGGAGCCACAGAACAAGCGCAAGTACTTCCTCCACACCTCAGCCCCTCTGGACTATGAGGCA
GTGCGTGACTACAATGTGGTGATCGTAGCCGTGGACTCAGGCAGCCCTAGCTTGTCCAGCAACAACTCCTTGCTGGTGC
GGGTCGCAGACACTAATGACAACCCTCCTGTGTTTGGCCAGGCTGTACTGGAGGTCTCTTTCCCAGAGAACAATCTGCC
TGGTGAGAGGGTGGCCACGGTGGTGGCCACAGATGCGGACAGCGGCAAGAATGCTGAGCTCACCTACTCCCTGGAGCCC
TCACCCCTCTCCTCGGAGTCACCGAGCGGCATCTTCAGCATTGACCCTGACTCTGGGGATGTGTCTGTGCAGGTGGTGC
TGGACCGTGAGCAGCGTGACACCTATGAGTTCCAAGTGACGGCCCGAGACAAGGGGGTACCATCACTGCAGGGCTCCAC
CATGGTGGTGGTGCGGGTGGCGGATCGCAATGACAATGAACCGCGCTTCATGCAGGATGTGTTCACTTTCTATGTGAAG
GAGAACCTGCAGCCCAACAGCCCCGTGGGCATGGTGACTGTGATGGACTTTGACAAGGGGCGCAATGCTGAGCTCAGCC
TCTCCATACAGCCCAGTGAACATGACCAGGCAACTGGCATCTTCTCTATTGAAAATGACACAGGAACAATCTACTCCAC
AGTCTCATTTGACCGGGAGCAGCAGACCAGCTACACCTTCAAAGTGAAGGCTGTGGATGGGGGTGA
CitationLin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
CopyrightCopyright © 2013 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Lin et al. 2013.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 34
stage 35
stage 35
stage 36
Surface Ectoderm
ib, interbud region
in situ (red): PCDH7
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.17890

Mouse

EmageMGI:1860487
EurexpressMGI:1860487
MGI GXDMGI:1860487

Frog

Xenbase1007356

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081104-299, ZDB-GENE-120206-1, ZDB-GENE-081104-299
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