GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

DICER1
dicer 1, ribonuclease III

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolDICER1
Official Full Namedicer 1, ribonuclease III
CGNC ID8359
also known asdicer, endoribonuclease Dicer|dicer 1, ribonuclease type III|helicase-moi
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001040465
PolypeptideNP_001035555
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.33735
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human23405ENSG00000100697MIM:138800MIM:606241
Mouse192119ENSMUSG00000041415All phenotypic alleles (16):Targeted, knock-out(6) Targeted, other(8) Gene trapped(2) MGI:2177178
Xenopus100170154, 100316917491113
Zebrafish324724ENSDARG00000001129ZDB-GENE-030131-3445ZFIN:ZDB-GENE-030131-3445
Gene Ontology
Molecular FunctionATP binding, ATP-dependent helicase activity, metal ion binding, ribonuclease III activity, RNA binding
Biological Processpre-miRNA processing, production of siRNA involved in RNA interference, more...targeting of mRNA for destruction involved in RNA interference
Cellular Componentcytoplasm, RISC complex
Links to other databases
Entrez Gene423437
Ensembl GeneENSGALG00000010999
KEGGgga:423437
GEISHA IdDICER1.Carraco.2014Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GGATCCAGAACTGGCTTACATCAGTAGCAATTTCATAACTGGACATGGCATTGGCAAGAATCAGCCTCGTAACAAGCAG
ATGGAAGTAGAATTCAGAAAGCAGGAAGAGGTTCTTAGAAAATTTCGAGCACACGAGACCAATCTTCTTATCGCTACCA
GTATTGTAGAAGAGGGTGTTGACATACCAAAATGCAATTTGGTGGTGCGTTTTGATTTGCCCACAGAATACCGTTCCTA
TGTGCAGTCAAAAGGAAGAGCTAGAGCACCAATTTCCAATTATATAATGTTAGCAGATACAGACAAAATTAAAAGTTTT
GAGGAAGATCTTAAGACATATAAAGCAATTGAGAAGATCCTGAGGAATAAATGCTCAAAATCTGTTGATACCAGCGAAA
CCGAAACTGAACCCATTGTTGATGATGATGATGTGTTTCCACCCTATGTGCTGAGGACAGATGAGAACAGTCCAAGAGT
TACTATCAACACTGCAATTGGACACATAAATAGGTACTGCGCTAGATTACCAAGTGATCCATTTACACACCTAGCTCCC
AAGTGTAAAACCCGAGAACTACCTGATCATACATTCTACTCTACTCTCTACCTGCCAATCAACTCACCTCTTCGAGCAT
CAATTGTTGGTCCTCCAATGAGTTGTGCAAGATTGGCTGAGAGAGTTGTAGCTCTTATTTGCTGTGAAAAACTGCACAA
AATCGGTGAACTGGATGACCATTTGATGCCAGTTGGAAAAGAAACTGTTAAATATGAGGAAGAGCTTGATTTACATGAT
GAAGAAGAAACCAGTGTGC
CitationCarraco G, Gonçalves AN, Serra C, Andrade RP. MicroRNA processing machinery in the developing chick embryo. Gene Expr Patterns. 2014 Nov;16(2):114-21. Epub 2014 Oct 1. DOI: 10.1016/j.gep.2014.09.002.
CopyrightCopyright © 2014 Elsevier B.V.
CommentsAuthors indicated the probe was amplified by PCR using the following primers: 5′-GGATCCAGAACTGGCTTACATC-3′ and 5′-GCACACTGGTTTCTTCTTCATCA-3′. Above sequence was extracted from NCBI accession number NM_001040465.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 3
Primitive Streak
Unlabeled
 
4-6
stage 6
Blood Islands
Headfold
Neural Plate/Tube
Primitive Streak
 
7-12
stage 8
stage 8
stage 8
stage 8
stage 8
stage 8
stage 8
stage 12
Forebrain
Head Mesenchyme
Hindbrain
Hypoblast
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
 
13-18
stage 14
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Ear/Otic Placode
Eye
Forebrain
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Limb Buds
Mesencephalon
Midbrain
Nephric Ducts
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Telencephalon
 
19-23
stage 23
stage 23
stage 23
stage 23
stage 23
Ear/Otic Placode
Eye
Forebrain
Hindbrain
Limb Buds
Mesencephalon
Midbrain
Pharyngeal Arches and Clefts
Somites
Tail
Telencephalon
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.33735

Mouse

EmageMGI:2177178
EurexpressMGI:2177178
MGI GXDMGI:2177178

Frog

Xenbase491113

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-3445
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona