GEISHA - A Chicken Embryo Gene Expression Database
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PDCD11
programmed cell death 11

Gene
Official SymbolPDCD11
Official Full Nameprogrammed cell death 11
CGNC ID6260
also known asprotein RRP5 homolog, RRP5, Programmed cell death protein 11
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_421739
PolypeptideXP_421739
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.17672
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human22984ENSG00000148843MIM:612333
Mouse18572ENSMUSG00000025047All phenotypic alleles (2):Targeted, other(2) MGI:1341788
Xenopus100327235, 779090967217
Zebrafish794079ENSDARG00000052480ZDB-GENE-030131-4076ZFIN:ZDB-GENE-030131-4076
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene423874
Ensembl GeneENSGALG00000008265
KEGGgga:423874

Entry 1

GEISHA IdChEST1018p6Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CAGCAGATGAAAATGACAGTGGAATTGAAGTGTATTACCGGGAAGAAGAGGATGGTGACCAGGAGGAAGAGGCAGCTAA
GAAGAAATCTAAGATAAGGAAATGTGGTGAAGTTCCCAGGCTGCAAGTTTCTGCAGGCTTCACCTGGGATGAGGACATG
AATGCACTGGAAGTGCCTGTACTGAATCAGAAGGAAGAGAGCTCAGAGAGTGAGGAGGAGGAGGAGAATCTGCAGTCTA
AGAAGAAACAAACAAAGAAGGAGAAGGAGCTGGAGAAGCAGAAGAAGGAGAAAGAGCTATGCAAATTAGAGGCAGCCCT
GATGGACCCCAGTCGTCAGCCCCAATCAGCAGATGATTTTGACCGTCTGGTGCTGAGTAGTCCCAACAGCTCCATCCTC
TGGCTGCAGTATATGGCTTTCCACCTCCAGGCTACTGAGATTGAGAAGGCTAGAGCTGTGGCAGAGAGAGCACTTAAAA
CAATCTGTTTCAGGGAAGAACAGGAGAAGCTGAATGTCTGGGTTGCTCTTCTAAACTTGGAGAACATGTATGGCACTGA
GGAGACACTGATGAAGGTCTTTGAGAGAGCTGTTCAATACAATGAACCTCTGAAAGTCTTCCAGCATCTGTGCGATATC
TATGCCAGTTCTGAGAAGTACAAGCAAGCAGAAGAATTGTACCACACAATGCTGAGGCGCTTCCGTCAGGAAAAATCAG
TGTGGCTGAAATATGCCTCTTTCCTCCTGAAGCAAGGCCAGACTGAGGCTACACACAGGCTTTTGGAGCGTGCTCTCAA
GGCTCTGCCCACCAAAGAACATGTGGATGTCATTTCAAGGTTTGCACAGTTGGAGTTCCGTTTCGGTGACCCAGAACAT
GCCAAGGCCCTGTTTGAAAGCACTCTCAACAGCTACCCGAAGCGAACAGACATATGGTCTATCTACATGGACATCATGA
TCAAACAGGGCAGCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Widespread Expression
 
13-18
stage 16
Widespread Expression
 
19-22
stage 22
stage 22
Allantois
Pharyngeal Arches and Clefts
Renal
Wing
 

Entry 2

GEISHA IdPDCD11.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerAGCCTGAACTGCGTCATTGAGG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGACCGTCGTGGAAGACTTTATCTGcDNA Template Length1057
Forward cDNA Template Probeshow
GGGCTCNNAGCTCAGCTCGTTCTTGGGTACCAGAACCTTTGACATCGTTGTAGAACTTCACAATGCAGCCAAATTCCCT
TGCACACACCACAAAGCCATGTGTGATCAGACCTGGTTCTGCATCTTCATAACTGGAGAGGACTGGAAGCTTTGATTGC
ACAAGAGTTTTCTTTAAAGTAAGGAATAGCTTCTTTTCTGCTGGATTGCACTCCAATACCCGACACCTGACTTCATCTC
CTACGTTGTACTTCTTCTCAGGCTGTTTCAGGATCACATCAGCAAGATGCATGGATGGCACAAGTCCTTTAATTCCATC
AGTAACTTTCACCTGCATCCCAATGGGTTTCANAGACAATACTTTGCCCTGCATGACATCCCCCGTGTGAATATCTTCG
TATCGCAGGAAACGAGCTTCAATAATTTGGTGCTTCANAGATACTATGCACATCTCATCCATCAGGCTGTAGTCAATGA
TTCGACACTTATGCTTACATCCAGCCTTGAACGCTGCAGGTTTAAAAGATTTTCTAGTTTTTGATAGATGTTTCGGCCG
TGCGAATGCAAGCATGCCATCATCAAGCTGAAAAACAGCACCAAACTGCTTGTAGAAAGCCTTTACTGTANACTCTTCT
ACTACTGCCCCTATGCGATCATTGGAGAGCTGGTTTGGGGAACCTCCAGGGTGGAGGAAGGCCTGCCGCAAAGTAAGCC
GCACCACCTTGGAGGTGGGGTGGGTANAGAGGATGCAAGCCTTCACCATTTGATTTGGGGAATAATTTGTGGACTTCTC
TGGGTCCACATGCATGAAAATCCACAATGCCAGTGAAGGAANATAGAANGGTCANACTGATACCCAGTGGAGCCACCTT
CTGCACTTGAGCTTTTACCACCAGCCCTGGCAGTAAATTAAAGAGTGTCCAGTTCTGTTGCTCTGTTGCAATGGATGCA
NCANCCTCTGATCGATCACAAANNAACGGGACCNCTCTTCCTTCATTCTTCANTTCCNCAAAGAC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Blood Islands
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
Headfold
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 7
stage 8
stage 10
stage 11
stage 11
Blood Islands
Blood Vessels
Ear/Otic Placode
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Head Process
Headfold
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Sinus Venosus
Somites
 
13-18
stage 13
stage 16
stage 16
stage 16
stage 18
Blood Islands
Dermomyotome
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Leg Mesenchyme
Lung
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somites
Spinal Cord
Wing Mesenchyme
section at wing bud
19-24
stage 22
stage 22
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
Atria
Dermomyotome
Ear/Otic Placode
Eye
Foregut
Hindbrain
Hindgut
Leg Mesenchyme
Liver
Lung
Mesonephros
Nasal Placode/Nerve
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Trunk Mesenchyme
Wing Mesenchyme
 
25-27
stage 27
stage 27
Foregut
Hindgut
Leg Mesenchyme
Liver
Lung
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Wing Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.17672

Mouse

EmageMGI:1341788
EurexpressMGI:1341788
MGI GXDMGI:1341788

Frog

Xenbase967217

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-4076
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