GEISHA - A Chicken Embryo Gene Expression Database
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HES6
hes family bHLH transcription factor 6

Gene
Official SymbolHES6
Official Full Namehes family bHLH transcription factor 6
CGNC ID4117
also known astranscription cofactor HES-6|hairy and enhancer of split 6
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_422641
PolypeptideXP_422641
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.2703
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human55502ENSG00000144485MIM:610331
Mouse55927ENSMUSG00000067071All phenotypic alleles (1):Targeted, knock-out(1) MGI:1859852
Xenopus100126814, 1000370361018103
Zebrafish100334468, 550600, 373116ENSDARG00000007097, ENSDARG00000019335ZDB-GENE-050228-1, ZDB-GENE-030828-5ZFIN:ZDB-GENE-050228-1, ZFIN:ZDB-GENE-030828-5
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene424829
Ensembl Gene
KEGGgga:424829

Entry 1

GEISHA IdChEST20g4Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CGGGACTGGCAGCACCCGCTGCCCGAGTGCCACCCGCGCCCGACCTGGCAGCGCCGGGCCGACAGGCTGGATTACAATG
ACGGCCGCAGCCATGGGCGGCGGTGCACACAAGCTGTCCAGCACCAAGGAGGAGAGGAAGTTAAGGAAACCTCTAATCG
AACGGAAGCGCAGGGAAAGGATTAACAACTGCTTGGACCAGCTGAAGGAGACCGTGGTTGGCGCATTCCACTTGGATCA
GTCTAAACTGGAAAAAGCAGACATCCTGGAAATGACGGTGAAACACCTCCAGAACATCCAGAACAGCAAGCTGATGGCT
GATTCCAAAGTGGGCCTTGAAGCTCAGCAGAGGTACAGCACGGGATACATTCAGTGCATGCACGAGGTCCACAACCTTC
TCCTTACCTGCGAGTGGATGGACAAGACGCTGGGGGCACGCCTGCTAAACCACCTGCTGAAATCCCTACCCAGGTCCAG
CGAAGACACCTCCAAAGCAGCATTAAGTTCTTCGAGCCCGTCTCAGCAGCCTCTCCTGACTGCAAAAACCCCACTGGGT
CCTAAAGGGAACACTACCGGCACAAATCCATCTCAGGAGCACTTCTACCCAGCGGAACACAAACAGGCTTTGAAAAATT
CATTCCAGCCACCCTCGCTGTTGGGTTTCGGCCAGGTCGACGCTGTGCCTCCCAGACAGGTCCTGCAGCCCAATTTTTC
CCATAACAACCCTAGTATGGGGTCATTAGATATGTGGAGACCATGGTAAAATGCGTTTTCAAATGTAAATCCTAACCTT
AGACACTCTTATGTATGTATCTTATAGATATGTTTCTTTACAACACTTGTGGAGCAAGTCTGCTCCCCGTAGTGTACTA
AAGACCAGGGTACTTCAAGCCGAAGTAAACCTATGTGTAGCCTG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 5
stage 5
Epiblast
Primitive Streak
hand transected
7-12
stage 10
stage 12
Endoderm
Extraembryonic
Spinal Cord
Surface Ectoderm
 
13-18
stage 16
Hindbrain
Neural Crest
 
19-21
stage 20
stage 20
stage 21
stage 21
Hindbrain
Midbrain
Neural Crest
Spinal Cord
 

Entry 2

GEISHA IdHES6-2.Fior.2005Data SourcePublication
Complete cDNA Template Probeshow
ATGTACAGCACAACGTCAGATGCTAAGGTGCGAGCTCAGGATGTGACACTTCCTCCGACACCACATGATTTCATGAGCT
CTAGCACTGAAAAGGAAGAGATGCTTCCTGGAGATGAGCTGCACTGCTGGAAGGAAAACATCAGCCTCGTGTCGGAGCT
TCTGATAGCAAAGGAAGCGACAAAGGGGAGCTCTGACCCCGCGCTCCCGACCGGGGGTAGCCCGGCGCGGAACCCCCCC
CTCCCTTCCTCGGCCCACGGCGGCCCGGCCCCGCGCCTCAGCACGGAGCTCGCTGCCGCCCCCGGGAAGCGCCGTGCCC
GGCCCGCACTGCAAGGAGCCTCCCAGGGAAAGTTCCGAGCGCCCGGGACCCGCCCGCCGCCGCCTCACCGCGCACCGCC
CGCCGCGGCCGCCGCCGAGCGACTCGGGGCCGGAGCGCGGCGAGCACGGCCGGGCCGGGCCGCTCCCCGAGCGTCCCCC
GAGGCCCGGAGGGCACGGCCCTGCCCCGACGCGCGCCGCCCCCGGGCCCGAAGGGTCGGACGAGACGGGTGGGCCCGGC
CCCTCGCGCGCTCACCGCCCGCCGCCTCCCGCCCGGTACCTGGGCCGCGGCCTGGCGCCTCCTCGGCGTCGCGTCCGGC
GGGGCCTGCCCCTTGCGCGGCACGACCGCCCGGCTCCGGCGGCTGCAGGCTGAGGCGCGGCCCGGCCCCCGCCCCGCGG
TGCTGCGGCGCCGCAGCTGCCCGTCCCTCGCGCCCGTCCTCGCCCGGCGGCGGAGCGCGGCGAGCAGCCGGCGGCGGCA
GCGGCGGCGGAACGCGGCGACGCTTCCGCCCGCCGCCACACGCGGGCGCCCCCTGCCGGAGCGGAGGTCCGAGAGCGCC
GCGCTCTGCCCGGGGCGGGGCTGTTGGTGCGGCCGAGGGGCGGCCCGGCCCGGCCCGTGCGGCGGGGTGCTGGGCCGAA
GGGTTCAGGAGGGCCCGAACCTCCCGGCAGCGGTTGCGCGGCCGCTGCAGAGGCCTTGGGGGGCCCGGAGGGGCAGAGC
AGCGCCTCGGGCCCCGCTGCCGTACGCCGTGTGTGACGAGCGCAGATGAGCCCGGGCGGAACAAAGGCACACGCGTGCC
GACGTGCGTCAGGGCGATGCCGTCCGTTAGGTGTAATCCACAGCCGGAGGAGCGGAGGAGAAGCAAAGCGCCCGCCGGG
ACTGGCAGCACCCGCTGCCCGAGTGCCACCCGCGCCCGACCTGGCAGCGCCGGGCCGACAGGCTGGATTACAATGACGG
CCGCAGCCATGGGCGGCGGTGCACACAAGCTGTCCAGCACCAAGGAGGAGAGGAAGTTAAGGAAACCTCTAATCGAACG
GAAGCGCAGGGAAAGGATTAACAACTGCTTGGACCAGCTGAAGGAGACCGTGGTTGGCGCATTCCACTTGGATCAGTCT
AAACTGGAAAAAGCAGACATCCTGGAAATGACGGTGAAACACCTCCAGAACATCCAGAACAGCAAGCTGATGGCTGATT
CCAAAGTGGGCCTTGAAGCTCAGCAGAGGTACAGCACGGGATACATTCAGTGCATGCATGAGGTCCACAACCTTCTCCT
CACCTGCGAGTGGATGGACAAGACGCTGGGGGCACGTCTGCTAAACCACCTGCTGAAATCCCTACCCAGGTCCAGCGAA
GACACCTCCAAAGCAGCATTAAGTTCTTCGAGCCCGTCTCAGCAGCCTCTCCTGACTGCAAAAACCCCACTGGGTCCTA
AAGGGAACACTACCGGCACAAATCCATCTCAGGAGCACTTCTACCCAGCGGAACACAAACAGGCTTTGAAAAATTCATT
CCAGCCACCCTCGCTGTTGGGTTTCGGCCAGGTCGACGCTGTGCCTCCCAGACAGGTCCTGCAGCCCAATTTTTCCCAT
AACAACCCTAGTATGGGGTCATTAGATATGTGGAGACCATGGTAAAATGCGTTTTCAAATGTAAATCCTAACCTTAGAC
ACTCTTATGTATGTATCTTATAGATATGTTTCTTTACAACACTTGTGGAGCAAGTCTGCTCCCGTAGGTGTACTAAAGA
CCAGGGTACTTCAAGCCGAAGTAAACCTATGTGTAGCCTGCATTATAGAAGGCTGCTATTATTTTGTATTTATTTAATA
CATCTAAATTATTGTATAGAATCCTCTCGTGCTCTTTAGTGTATATTAATTTTATAACTTTTTTTGTCTCACATTCCTA
AAATAATCGATGTTCTATCAATAAATATCAGACGACGACAACAACCCTCTCTTGCACCAAGCTCACCTCTGGGATCTCA
TGCAGCAGCTTCACAGAACAAGGCAGCAAACAGCCAATCTCCTTATTTTTGTTATAGTTACAGCTATTCCTGTGCAACC
ATGGGAGATTTCAGTTCTGATTCCTGTAAGGACATTGCAGTGCTGAAAACACGAAGGGAGAGACTTGGGTTAGACATTT
TAGACTGCTTAGGAATATCCTCTGTATTGCTCAGTGTCCACACATTGCTCCTGAACATGCTGACACAACTGTGCAACCA
GCGAGCTACGTGTATGTCACCCGTAGTTACATTTAGAGATTGGTTTTGTTTATTTTCTAAATAAACTCTTGGAAGACAG
TGA
CitationFior R, Henrique D (2005). A novel hes5/hes6 circuitry of negative regulation controls Notch activity during neurogenesis. Dev Biol. 2005 May 15;281(2):318-33.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_422641).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Early Mesoderm
Hensen's Node
Primitive Streak
 
7-8
stage 7
stage 8
stage 8
Ectoderm
Hensen's Node
Neural Plate/Tube
 

Entry 3

GEISHA IdHES6.Paxton.2010Data SourcePublication
Complete cDNA Template Probeshow
CTACCGGCACAAATCCATCTCAGGAGCACTTCTACCCAGCGGAACACAAACAGGCTTTGAAAAATTCATTCCAGCCACC
CTCGCTGTTGGGTTTCGGCCAGGTCGACGCTGTGCCTCCCAGACAGGTCCTGCAGCCCAATTTTTCCCATAACAACCCT
AGTATGGGGTCATTAGATATGTGGAGACCATGGTAAAATGCGTTTTCAAATGTAAATCCTAACCTTAGACACTCTTATG
TATGTATCTTATAGATATGTTTCTTTACAACACTTGTGGAGCAAGTCTGCTCCCGTAGGTGTACTAAAGACCAGGGTAC
TTCAAGCCGAAGTAAACCTATGTGTAGCCTGCATTATAGAAGGCTGCTATTATTTTGTATTTATTTAATACATCTAAAT
TATTGTATAGAATCCTCTCGTGCTCTTTAGTGTATATTAATTTTATAACTTTTTTTGTCTCACATTCCTAAAATAATCG
ATGTTCTATCAATAAATATCAGACGACGACAACAACCCTCTCTTGCACCAAGCTCACCTCTGGGATCTCATGCAGCAGC
TTCACAGAACAAGGCAGCAAACAGCCAATCTCCTTATTTTTGTTATAGTTACAGCTATTCCTGTGCAACCATGGGAGAT
TTCAGTTCTGATTCCTGTAAGGACATTGCAGTGCTGAAAACACGAAGGGAGAGACTTGGGT
CitationPaxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright 2009 Elsevier B.V. All rights reserved.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described: 5-ctaccggcacaaatccatct-3; 5-acccaagtctctcccttcgt-3.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
Ear/Otic Placode
Hensen's Node
Neural Plate/Tube
Primitive Streak
 
7-10
stage 8
stage 10
Ear/Otic Placode
Hindbrain
Neural Plate/Tube
 

Entry 4

GEISHA IdHES6-1.VilasBoas.2010Data SourcePublication
Complete cDNA Template Probeshow
TGGCAGCACCCGCTGCCCGAGTGCCACCCGCGCCCGACCTGGCAGCGCCGGGCCGACAGGCTGGATTACAATGACGGCC
GCAGCCATGGGCGGCGGTGCACACAAGCTGTCCAGCACCAAGGAGGAGAGGAAGTTAAGGAAACCTCTAATCGAACGGA
AGCGCAGGGAAAGGATTAACAACTGCTTGGACCAGCTGAAGGAGACCGTGGTTGGCGCATTCCACTTGGATCAGTCTAA
ACTGGAAAAAGCAGACATCCTGGAAATGACGGTGAAACACCTCCAGAACATCCAGAACAGCAAGCTGATGGCTGATTCC
AAAGTGGGCCTTGAAGCTCAGCAGAGGTACAGCACGGGATACATTCAGTGCATGCATGAGGTCCACAACCTTCTCCTCA
CCTGCGAGTGGATGGACAAGACGCTGGGGGCACGTCTGCTAAACCACCTGCTGAAATCCCTACCCAGGTCCAGCGAAGA
CACCTCCAAAGCAGCATTAAGTTCTTCGAGCCCGTCTCAGCAGCCTCTCCTGACTGCAAAAACCCCACTGGGTCCTAAA
GGGAACACTACCGGCACAAATCCATCTCAGGAGCACTTCTACCCAGCGGAACACAAACAGGCTTTGAAAAATTCATTCC
AGCCACCCTCGCTGTTGGGTTTCGGCCAGGTCGACGCTGTGCCTCCCAGACAGGTCCTGCAGCCCAATTTTTCCCATAA
CAACCCTAGTATGGGGTCATTAGATATGTGGAGACCATGGTAAAATGCGTTTTCAAATGTAAATCCTAACCTTAGACAC
TCTTATGTATGTATCTTATAGATATGTTTCTTTACAACACTTGTGGAGCAAGTCTGCTCCCGTAGGTGTACTAAAGACC
AGGGTACTTCAAGCCGAAGTAAACCTATGTGTAGCCTGCATTATAGAAGGCTGCTATTATTTTGTATTTATTTAATACA
TCTAAATTATTGTATAGAATCCTCTCGTGCTCTTTAGTGTATATTAATTTTATAACTTTTTTTGTCTCACATTCCTAAA
ATAATCGATGTTCTATCAATAAATATCAGACGACGACAACAACCCTCTCTTGCACCAAGCTCACCTCTGGGATCTCATG
CAGCAGCTTCACAGAACAAGGCAGCAAACAGCCAATCTCCTTATTTTTGTTATAGTTACAGCTATTCCTGTGCAACCAT
GGGAGATTTCAGTTCTGATTCCTGTAAGGACATTGCAGTGCTGAAAACACGAAGGGAGAGACTTGGGTTAGACATTTTA
GACTGCTTAGGAATATCCTCTGTATTGCTCAGTGTCCACACATTGCTCCTGAACATGCTGACACAACTGTGCAACCAGC
GAGCTACGTGTATGTCACCCGTAGTTACATTTAGAGATTGGTTTTGTTTATTTTCTAAATAAACTCTTGGAAGACAGT
CitationVilas-Boas F, Henrique D. HES6-1 and HES6-2 Function through Different Mechanisms during Neuronal Differentiation. PLoS One. 2010; 5(12): e15459.
CopyrightCopyright Vilas-Boas, Henrique. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Epiblast
Headfold
Hensen's Node
Notochord
Primitive Streak
 
7-12
stage 8
stage 9
stage 9
stage 10
stage 10
stage 10
Anterior Neuropore
Heart
Lateral Plate Mesoderm
Myocardium
Neural Plate/Tube
Notochord
Pancreas
 
19-23
stage 23
stage 23
stage 23
stage 23
  

Entry 5

GEISHA IdHES6-2.VilasBoas.2010Data SourcePublication
Complete cDNA Template Probeshow
TGGCAGCACCCGCTGCCCGAGTGCCACCCGCGCCCGACCTGGCAGCGCCGGGCCGACAGGCTGGATTACAATGACGGCC
GCAGCCATGGGCGGCGGTGCACACAAGCTGTCCAGCACCAAGGAGGAGAGGAAGTTAAGGAAACCTCTAATCGAACGGA
AGCGCAGGGAAAGGATTAACAACTGCTTGGACCAGCTGAAGGAGACCGTGGTTGGCGCATTCCACTTGGATCAGTCTAA
ACTGGAAAAAGCAGACATCCTGGAAATGACGGTGAAACACCTCCAGAACATCCAGAACAGCAAGCTGATGGCTGATTCC
AAAGTGGGCCTTGAAGCTCAGCAGAGGTACAGCACGGGATACATTCAGTGCATGCATGAGGTCCACAACCTTCTCCTCA
CCTGCGAGTGGATGGACAAGACGCTGGGGGCACGTCTGCTAAACCACCTGCTGAAATCCCTACCCAGGTCCAGCGAAGA
CACCTCCAAAGCAGCATTAAGTTCTTCGAGCCCGTCTCAGCAGCCTCTCCTGACTGCAAAAACCCCACTGGGTCCTAAA
GGGAACACTACCGGCACAAATCCATCTCAGGAGCACTTCTACCCAGCGGAACACAAACAGGCTTTGAAAAATTCATTCC
AGCCACCCTCGCTGTTGGGTTTCGGCCAGGTCGACGCTGTGCCTCCCAGACAGGTCCTGCAGCCCAATTTTTCCCATAA
CAACCCTAGTATGGGGTCATTAGATATGTGGAGACCATGGTAAAATGCGTTTTCAAATGTAAATCCTAACCTTAGACAC
TCTTATGTATGTATCTTATAGATATGTTTCTTTACAACACTTGTGGAGCAAGTCTGCTCCCGTAGGTGTACTAAAGACC
AGGGTACTTCAAGCCGAAGTAAACCTATGTGTAGCCTGCATTATAGAAGGCTGCTATTATTTTGTATTTATTTAATACA
TCTAAATTATTGTATAGAATCCTCTCGTGCTCTTTAGTGTATATTAATTTTATAACTTTTTTTGTCTCACATTCCTAAA
ATAATCGATGTTCTATCAATAAATATCAGACGACGACAACAACCCTCTCTTGCACCAAGCTCACCTCTGGGATCTCATG
CAGCAGCTTCACAGAACAAGGCAGCAAACAGCCAATCTCCTTATTTTTGTTATAGTTACAGCTATTCCTGTGCAACCAT
GGGAGATTTCAGTTCTGATTCCTGTAAGGACATTGCAGTGCTGAAAACACGAAGGGAGAGACTTGGGTTAGACATTTTA
GACTGCTTAGGAATATCCTCTGTATTGCTCAGTGTCCACACATTGCTCCTGAACATGCTGACACAACTGTGCAACCAGC
GAGCTACGTGTATGTCACCCGTAGTTACATTTAGAGATTGGTTTTGTTTATTTTCTAAATAAACTCTTGGAAGACAGT
CitationVilas-Boas F, Henrique D. HES6-1 and HES6-2 Function through Different Mechanisms during Neuronal Differentiation. PLoS One. 2010; 5(12): e15459.
CopyrightCopyright Vilas-Boas, Henrique. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.2703

Mouse

EmageMGI:1859852
EurexpressMGI:1859852
MGI GXDMGI:1859852

Frog

Xenbase1018103

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050228-1, ZDB-GENE-030828-5
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