GEISHA - A Chicken Embryo Gene Expression Database
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CNTN6
contactin 6

Gene
Official SymbolCNTN6
Official Full Namecontactin 6
CGNC ID5994
also known ascontactin-6, contactin-6
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_425170
PolypeptideXP_425170
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human27255ENSG00000134115MIM:607220
Mouse53870ENSMUSG00000030092All phenotypic alleles (1):Targeted, knock-out(1) MGI:1858223
Xenopus
ZebrafishZDB-GENE-120406-1ZFIN:ZDB-GENE-120406-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene427597
Ensembl GeneENSGALG00000007927
KEGGgga:427597
GEISHA IdCNTN6.Yamagata.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGGACCTTTGGAGTCATCACAAAAAAAAAGTGGAGCTGACCAACACTAGCAGTGGTAAAAATTATCCGGGCTTAATTA
ATCAAATCCACTTAAGACATTGTCTAATCTTAAATTATTGTTTTTGTTTTGCAGAGGAAGAAACACTACATGGTCCTAT
TTTCATTCAAGAGCCATATGATATCACTTATTCCATGGGCTCAGTGAATCCAGAAGTCCTATTGAACTGTACAGCTAAA
GGATATCCCCTCCCCAGCTACAGGTGGAAGCAAAATGGCACAGATATTGATCTTACCATGAGTTATCACTACAGGTTGG
TTGGAGGCAGCTTGGCAATCAATAACCCACGTAAAAAACAGGATATTGGAACATACCAGTGTTTGGCCACAAATTCATT
TGGAACAATTCTGAGCAGGAAGGCAAAGCTTCAATTTGCATACCTTGAGAATTTTGAAATGAAAACAAGAAGCACAGTG
TCAGTCAGAGAAGGACAAGGGGTGGTTCTGCTCTGCGGTCCTCCGCCACATCATGGAGGCTTGTCCTTTGCGTGGACCT
TCAACAATAACACCTTGTACGTTCAGGAGGACAGACGCCGTTTTGTTTCACAAGAAACAGGAAATCTGTACATTGCCAA
AGTGGAGCCATGGGATGTGGGCAATTACACCTGCGTGGTGACCAACTCCAAGGCTGGGCGGAGTGTTCAGGGGCCACCC
ACTCCCCTCACCCTGCGCAGCGATGGTGTGATGGGAGAGTATGAACCAAAGATTGAAGCACGTTTTCCAGAAACAACAT
ACGCAGCAAAGGGCTCATCTGCTAAACTGGAGTGTTTTGCCCTTGGAAATCCAGTCCCTAGTATCAGTTGGAGGAGGTC
TGATGGAAACTCACTGACAAAGAAAATCAAACACGACAAAAACAAAGGAGTTCTTGAAATCCCAGATGTTCAGCAAGAA
GATGGAGGCTCTTATGAGTGTATCGCAGAAAATATTCGAGGCAGAAACATTGCAAGAGGTCAATTATTCGTCTATGCAC
TCCCTGAATGGGATAAGAAAATTGAAAATGCCTTTCTGTCTCTCTATGACAGTTTGTTTTGGGAATGTAAGGCAAAAGG
AAAACCAACCCCTTCCTACAGCTGGTTAAAAAATGGCCAGCCTCTCATGTCAGAGGAGAGAATTCAAGTGGAAAATGGA
ACTCTTATCATACCAATGCTGAATATGTCAGACTCTGGCCTCTATCAATGTGTGGCAGAAAACAAGTACGATACTATTT
ATGCCAGTGCTGAATTGAGGGTTATAGCTGCAGCCCCCGATTTTTCCAAAAACCCCGTGAAAAAAACATCCATTGTTCA
AGTTGGTGGTGAAGTCACCATTGGTTGTAGACCAAGTGCTTCTCCCAGAGCAGCTATTGACTGGAGAAAGGGCCCCGAG
GTGCTGCGCCTGAACAAAAGGGCCCTCTTACTGGAGGATGGCAGTCTCAGGCTTTACAACATCACCAAATCAGATGCTG
GGGTGTACACTTGTATAGCAACAAATCAGTTCGGAGTTGCCAGAAATTCAGGGAACCTGATTGTGAAAGAAAGGACTGT
AATTACTATTGCACCTTCTAACATGGATGTAACAGTTGGAGAAAGCATAGTCCTTCCATGCCAGGTTTCTCACGACCCC
TCCATTGCTGTGGCGTTCACGTGGTCATTCAGTGGCAACCAAATTGACTTTAAAAGAGGAATGCCTCATTTTGAGAGAA
TTGGAGGAGAATCTGTTGGAGATCTGATGATAAGAAATATTCAACTTCATCATTCTGGGAAATATGTGTGCATGGTGCA
GACAACTTTAGACAGTCAATCTACAGCAGTAGATATAATTGTAAGAGGTCCCCCAGGCCCACCAGAAGATGTTAGAGTT
GAACATATTTCTAGCACTACTGCCGTGTTATCCTGGAAATCTGGAAAAGATAACAATAGTCCGGTCCAGATCTACAGCA
TTCAAACAAGGACTCCTTTCTCAGTTGGATGGCAGGCAGTTTCAACAGTTCCTGAAGTCCTCAATGGTAGGACTCACAA
AGCAACAGTGGTTGACTTAAGCCCTTGGGTTGAGTATGAGTTCCGTGTAGTTGCCAGAAACAGTGTTGGAACTGGAGAG
CCAAGCAAGCCATCAGCTCTACTGAAAACCAAAGCAGCAGTTCCCACAGTGGCACCAACCAACGTCAGTGGAGGAGGAG
GGAGCCGCTCAGAGCTGGTCATCACATGGGAGCCAGTGCCAGAAGAACTACAAAATGGAGAAGGTTTTGGCTATATCAT
TATGTTTCGTCCTCTTGGCTCAACAACGTGGACAAAAGCAGCAGTGGCTCCCATAGAAGCAAGTAAATATGTTTATAGG
AATGAAAGCATTACACCTCTGTCTCCTTTCGAAGTGAAAGTTGGTGTCTACAACAATGAAGGAGAAGGGACCCTGAGCT
CCATATCCATTGTCTACGCTGGAGAAGATGAGCCACAGATAGCACCAGCAGGCACTTCAGCACTGAGCATCTCGGCAGC
AGAGGTGGAGGTCTCCTGGCAGCCCGTTGCATGGAACAGGCACACAGGCAGGGTGCTGGGCTATGAGGTTTTATATTGG
ACTGATGATCCCAAGGAAAGCACAGCTGGTAAAGTCAGAGTCAATGGGAACGTAACAGCCAAAAATATCACAGGCCTAA
AAGCTAACACAGTGTATTTTGCAACAGTTCGGGCTTACAACACAGCAGGGACGGGGCCCTCCAGTGCCCCAGTAAATGT
CACCACTAAAAAGTCACCACCCAGTCAACCTCCAGCAAATATCGCGTGGAAACTGACGAATTCCAAAATCTGCTTGAAT
TGGGAACACGTGAAAACAATGGAGAATGAATCAGAGGTGCTAGGCTACAAAATTTTGTACAGACAAAACAGGCACAGCA
AAGCTCATATACTGGAGACAAACAACACTTCAGCTGAACTTCTGGTGCCATTCGAAGAAGATTATCTCATAGAAATAAG
AACCATTAGTGATGGTGGGGATGGCAGTAGCAGCGAGGAAATTAGGATCCCAAAAATATCAAGTTTAAGCTCTGGAGGA
ATAAAACTGTCCCCAAGAGAACTGTATACACTGGCATCTGGGATCCTACTCTTGAGTTTTGTTCTTACATATTCTTTTC
CTTGATGACTGAAGCAATGGACTTCTAAAATTGAACTACCTGTAGATTCTGTCTTAATACTTTATCACAACCAAAATTT
TCAGTAAAGAAAAATA
CitationYamagata M, Sanes JR. Expanding the Ig superfamily code for laminar specificity in retina: expression and role of contactins. J Neurosci. 2012 Oct 10;32(41):14402-14. 10.1523/JNEUROSCI.3193-12.2012.
CopyrightCopyright © 2012 the authors
CommentsAccording to the authors, "Full-length chicken cntn1, 2, 4, and 5 cDNAs and partial chick cntn3 and 6 cDNAs were amplified from oligo-dT-selected mRNA from embryonic day (E) 15 chick retina and optic tectum, using SuperScript III (Life Technologies), and Phusion high-fidelity thermostable DNA polymerase (New England BioLabs), and the products were cloned into pCR8-TOPO (Life Technologies)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc# XM_425170.3).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-40
stage 40
stage 40
Unlabeled
 

Mouse

EmageMGI:1858223
EurexpressMGI:1858223
MGI GXDMGI:1858223

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-120406-1
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