GEISHA - A Chicken Embryo Gene Expression Database
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FOXI1
forkhead box I1

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolFOXI1
Official Full Nameforkhead box I1
CGNC ID1498
also known asforkhead box protein I1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Gallus-Browse
Sequence Information
Genomic
RNAXM_425185
PolypeptideXP_425185
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST Profile
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human2299ENSG00000168269MIM:600791MIM:601093
Mouse14233ENSMUSG00000047861All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:1096329
Xenopus394546, 380059494124
Zebrafish387258, 353313ENSDARG00000009550, ENSDARG00000019659ZDB-GENE-031126-4, ZDB-GENE-030505-1ZFIN:ZDB-GENE-031126-4, ZFIN:ZDB-GENE-030505-1
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene427613
Ensembl GeneENSGALG00000002105
KEGGgga:427613

Entry 1

GEISHA IdFOXI1.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-TACGTGGCTGACAACTTCCC-3’
Reverse cDNA Template Primer5’-ATTAACCCTCACTAAAGGCGTGGAGTGCTTGTGACTTG-3’cDNA Template Length841
Complete cDNA Template Probeshow
TACGTGGCTGACAACTTCCCATTTTACAACAAAAGCAAAGCTGGCTGGCAGAACTCAATTCGGCACAACTTGTCTCTCA
ACGATTGTTTCAAGAAGGTGCCTAGAGATGAAGATGATCCAGGAAAAGGGAATTACTGGACTCTGGACCCAAACTGTGA
AAAGATGTTTGACAATGGCAACTTTCGCAGGAAGAGGAAAAGGAAGTCTGATATTGGGGCTAGTTCTGCCCATCTGACA
TCTGAGAAATCCGAGGACAGTGCCTTGACTGGCAGCCCCAAAGCTGTGGAGCATCAGGATCTTTTGGAAAACTCTTCAT
CTGGGACTGACAATCCACCCGATAAAGGATCTCCACCTCCATCTTCCAGTAGCCCATGCCTTAGTAATTTCATTTCCAG
TATGACTGCATATGTTAACGGCTCTAATTCAGTGGGCCGCTCAGTGCCATTGGGACTTAATGCTGAACCCACTGACAAA
ATGGGACAGAATATGGTAGGCTTAAATTCCTACTCTCCACTCTCTAATGTCCCCAGTCACGGTGTGGGAGAGTGGTCCA
ATTCTATGCCTCCTAGTCACCTTGGCTATAGCAATTCAGTGCTCAACCAGTTTAACACCCATTTTTACAGTAGTATCAG
CACAAATAACACTCTGTTTTCCAGGGAGGGGACAGAGGTTTAAATAAGAGATCATAAGACATCAAAATATAGCTATTTA
TGAGAGGGAGTGACCTGTGGGTGGATGATTATTGTTAGTCTGTTGTCTCTAGGACCTGCATTGCATCCTACCTTCTGAC
AGCCCCAAACGTTTTAGCTGTTGTCCTTACTCAAGTCACAAGCACTCCACG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 16
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
 
19-24
stage 19
stage 20
stage 20
Allantois
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme
 
25-26
stage 26
Widespread Expression
 

Entry 2

GEISHA IdFOXI1.Freter.2012Data SourcePublication
Complete cDNA Template Probeshow
GATGCACCTGTCTCAGGAAAGGAGCACTAGCACAGGTGTGTCATAACTTATCAGCTGCCTGTGTTAGAGCATGAGCTCC
TTTGATCCACAAACGCACTCTCCACCACGCTGCAGCCCACAATTTCCAAATATCGGTCAAGAACCTCCAGAAATGAATA
TCTACTATGAGAACTTCTTCCACCCACAGAATATTCCTAGTCCGCAGCGACCGAGCACCTTTGAGACAACGGACTACAA
CAGCACACCTAATCCTTACCTCTGGCTAAACGGACCTTCCATTACTCCACCACCGTATCTCCCGGGATCCAATGCCAGT
CCCTTCATTCCTCAGTCTTATGGGATGCAAAGGCAGCTCCTGCCTAACATGCACGGCTTGGGAGGAACTGATCTTGGCT
GGCTTCCTCTTCCATCCCAAGAAGAGCTTATGAAGTTGGTTAGACCACCTTACTCCTACTCTGCACTTATTGCCATGGC
TATCCACGGAGCACCAGAAAAGAGGTTGACTCTCAGTCAGATCTACCAGTACGTGGCTGACAACTTCCCATTTTACAAC
AAAAGCAAAGCTGGCTGGCAGAACTCAATTCGGCACAACTTGTCTCTCAACGATTGTTTCAAGAAGGTGCCTAGAGATG
AAGATGATCCAGGAAAAGGGAATTACTGGACTCTGGACCCAAACTGTGAAAAGATGTTTGACAATGGCAACTTTCGCAG
GAAGAGGAAAAGGAAGTCTGATATTGGGGCTAGTTCTGCCCATCTGACATCTGAGAAATCCGAGGACAGTGCCTTGACT
GGCAGCCCCAAAGCTGTGGAGCATCAGGATCTTTTGGAAAACTCTTCATCTGGGACTGACAATCCACCCGATAAAGGAT
CTCCACCTCCATCTTCCAGTAGCCCATGCCTTAGTAATTTCATTTCCAGTATGACTGCATATGTTAACGGCTCTAATTC
AGTGGGCCGCTCAGTGCCATTGGGACTTAATGCTGAACCCACTGACAAAATGGGACAGAATATGGTAGGCTTAAATTCC
TACTCTCCACTCTCTAATGTCCCCAGTCACGGTGTGGGAGAGTGGTCCAATTCTATGCCTCCTAGTCACCTTGGCTATA
GCAATTCAGTGCTCAACCAGTTTAACACCCATTTTTACAGTAGTATCAGCACAAATAACACTCTGTTTTCCAGGGAGGG
GACAGAGGTTTAAATAAGAGATCATAAGACATCAAAATATAGCTATTTATGAGAGGGAGTGACCTGTGGGTGGATGATT
ATTGTTAGTCTGTTGTCTCTAGGACCTGCATTGCATCCTACCTTCTGACAGCCCCAAACGTTTTAGCTGTTGTCCTTAC
TCAAGTCACAAGCACTCCACGTGTGGCAGCTCCATATAAAAATGGAGGGATTTTAACAGCAAGAGTAGTGAAAGATAGT
GTTTTAGCAAGAATAGTGGAGATTGTGTTTGTACTGCTACCAACCATGGTCCCCTGTGGACATCCTTGAGAGGAGTTAC
TGTTTACCTTAGGGATTAAACTTTCTGGCGTGGCACTAGTTTTGCTATGATGCTTTTAAAGCACTAATATATATTTGGC
TATATCTGTAAATCACCTCTCTTGCTGATACAGGCTGTCTGTACTAGAGATTCTTGGTAAGTTCTTATTTGGACAAAGC
TATTCTGAGACACTGAAGGACCTATAGCAAAAACTACTACATAGTGAATAATAACTAGCAGAGGATGAGTGAATGCCCT
CTTTAAATGTCTCTAATACTAGAGCATACGTTGCCTCAAGTCTGATGCTATTTCTCCCCTAAGGGGAATGTGGTTGTGA
AGCAGGCTAGCATCATCAGGGACACAACATTCACTTTGAAACTGAAACAAAGCATAGGAAAATACAATGGAGTTGCCTT
CTGCTGGTGCAATCAGATCTTTGTGTTTTAAATTCTAAGTGCAGGGTCAGATTTTGTGGAAAACGTCTCTGTACCGTAT
ATTTTCCTTCTTTTTGTAACAAAGTCCATGCAATTGTTTTGTCATTGTGTAAATATTAGGAATAATTCTTATTTTTTTA
TATTCTACTGTAACCACAAACAAAAATTCAAATAAATGAAGTTTTTTCAAACCAATAATTGAATCAAGTTTCATATTTA
TGTAAAATAATGTCTGTAGAGATATTATGCAACATATGTAGGCACCATGTTTTACTGGTATTTACCTGTACACAGCTGT
GCACTGATGAGACTTCCAGAATGATGGAAAACATATTAATGCACTGTAATAGCTACTACTGCTTTGTCTTGATTTTTTT
TTTTTTTTAACTCTACATGATATAGTTTTGTTACAGGCCACCCCAGAAACATTTTTAATAAAGAATTTGTATATACGCA
TGTGTGTGTACTATACTTCTTACATCTTTAAAAGCCTCCTCAATAGTTTGACTTGTGCAGTTAGCCTGAGGAAAACCTA
GGGAAATATTCAAGTAAGGAGTGAGACAGTATATGTCTAGAGAATCACAATTTGCATGCCTGAGGAATACAATTGGCTG
CTAT
CitationFreter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (XM_425185.6).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 11
Ear/Otic Placode
Ectoderm
peri-otic
all
 
  

Mouse

EmageMGI:1096329
EurexpressMGI:1096329
MGI GXDMGI:1096329

Frog

Xenbase494124

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-031126-4, ZDB-GENE-030505-1
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