GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

MATN4
matrilin 4

Gene
Official SymbolMATN4
Official Full Namematrilin 4
CGNC ID53281
also known asmatrilin-4
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
Sequence Information
Genomic
RNAXM_425698
PolypeptideXP_425698
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human8785ENSG00000124159MIM:603897
Mouse17183ENSMUSG00000016995MGI:1328314
Xenopus100492840, 100380989990977
Zebrafish497348ENSDARG00000015947ZDB-GENE-050208-64ZFIN:ZDB-GENE-050208-64
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene428140
Ensembl Gene
KEGGgga:428140

Entry 1

GEISHA IdMATN4.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGGTGAAGCAGTTTGTGAACCG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGCTTGGGATTTTGTGATACGAGGACcDNA Template Length767
Forward cDNA Template Probeshow
AAGCANGGAGCTTTAATAATCTATCAATAACAATGCCACGTAGCTACTGGTAGGTCCCCTCTGAGCCCTGCGACCCGCC
GCGAGGAATCACTTCTTGAGGGCAATCTGCTTCTCCAGGGCTTCCAGTCTGGCTGTCATCTGAGCAATTCTCTCAGTCA
GGCTCTGCAGGATGGCCACGGTGTTTGTCTGGAACTGNACCAACGCCTCACACTCACATGGGCTGCGGATCTCCGTCTC
TCCTCTGCCCTCCTCTGGGCAGATGTTTAGCTTGAAGTTCTCCACGAGGTGGGTCATGGTGGTGAAGTCTGCTGAGTAG
GAGAAGTGCTGCTCCACCGGCTCAGAGGCGATGGCCCTCAGTTCCTCTTCCACTGCCTTGCCAACACCCACAGCGAACA
TGACGATACCTGACTCTTTAGCTCTCTGTGCCCACTCCGAGATGTCATCTTGGGAGCGTCCATCCGTGAAGACGAGCCC
GATCCTGGGCACATTGTGGGAGAGTGGCCTGGCCCCTTCCAGTTCANAGAAGCTGTGCTCTACCATGTGCTTGAGGGCC
AAGCCCGTCATGGTGCCCTTCTCCATGTACTCCATCTTCATCACCGCCGCCTTGATCTCCTCTGCACTGTGGTACTTGT
TGAGGGGGAACTCGGTGCGGACNCGGCTGGAGTACTGCACCAGCCCCACATGTGTGCCATCGGGGGACACTTCCAGCAG
ATCCACAATGCGGTTCACAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Early Mesoderm
Extraembryonic Mesoderm
Hensen's Node
 
7-12
stage 8
stage 8
stage 9
stage 9
stage 9
stage 9
stage 12
Ear/Otic Placode
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Crest
Notochord
Paraxial Mesoderm
 
13-18
stage 14
stage 15
stage 15
stage 15
stage 17
Cranial PNS
Ear/Otic Placode
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Notochord
Sclerotome
Somites
Spinal Ganglia and Nerves
 
19-24
stage 21
stage 22
stage 22
stage 22
stage 22
Cranial PNS
Notochord
Sclerotome
Spinal Ganglia and Nerves
 
25
stage 25
stage 25
stage 25
stage 25
stage 25
Cranial PNS
Leg Bones
Notochord
Sclerotome
Spinal Ganglia and Nerves
Wing Bones
 

Entry 2

GEISHA IdMATRILIN4.Bandyopadhyay.2008Data SourcePublication
Complete cDNA Template Probeshow
CGCAGTCCCGCAGCGCCCCGCACGTACCTGAGCCAGCAGCGCGGCGGGGAGCGGCTCCGCGGCCGGTACGGTGAGCGCC
CAGCTCTGCTCCCACAGCAACGATGAAGCTCCTGCCGCTCGCTGCGCTCCTCCTGCTCGTCCTGACGGCGCTGGAAGCC
AGACCGAAGCCTGCAGCCCTGAAGTGCAGGACGGGTCCCCTGGACATCGTCTTTGTGATCGACAGCTCCCGCAGCGTGC
GTCCCTTCGAGTTCGAGACCATGCGGCGCTTCATGATCGACATCATCGGCAACCTGGACGTGGGCCCCAACGCCACGCG
GGTGGGGGTGATCCAATACTCCAGCCAGGTGCAGAACATCTTCTCCCTGAAGACCTTCTTCACGCGGGCGGAGATGGAG
AGAGCCATCAACAGCATCGTGCCGCTGGCCCAGGGCACCATGACGGGGTTGGCCATCCAGTACGCCATGAACGTGGCCT
TCACCGTGCAGGAGGGCGCGCGCCCACCCCACAAGAAAATCCCCCGCATCGCCATCATCGTGACGGATGGGCGGCCCCA
GGACCGCGTCTCCGAGGTGGCCGCCCACGCACGGAACGCCGGCATTGAGATCTACGCCGTGGGCATCCAGCGGGCAGAC
ATGAACTCACTGCGGGCCATGGCCTCACCGCCGCTGGAGGAGCACGTCTTCCTGGTGGAGTCCTTCGAGCTGATCCAGC
AGTTTGGGAAGCAGTTCCAGGATAAGCTGTGCGGGGTGGACATGTGCATGGAACGGGACCACGGATGCCAGCACAGCTG
CGTGAGCACCCCCGGCTCCTTCTACTGTGAATGCCACCCTGGCTACCAGCTCAACGTGGATGGAAAGACCTGTTCCCCC
ATCGACGCGTGTGCTGACGGCAGGCACGGCTGTGAGCACCACTGCATCAGCGCCCGTGGGACGTACTCATGCCGCTGCC
GTGCCGGGTATTACCTGAACCAGGACAGGAGGAGCTGCACAATGATCGATTACTGCAGCTTCGGCAACCACAGCTGCCA
GCACGACTGTGTGAGCATCCCCGCCGGGCACCGCTGCCGCTGCCGCGATGGCTTCATGCTGCAGCACGACGGCAAGTCC
TGTCGCGCCATTGACCTCTGCAACGGCGTGGATCACGGCTGCGAGTTCAAGTGTGTGAGCAGTGAGGGCTCATTCCACT
GCGTGTGCCCTGAAGGCCAGCAGCTCCAGGCTGATGGGAAGACGTGCAGCAAGTGTGGGGCCGGACACGTCGACCTGGT
GATGGTGATCGATGGCTCCAAGAGTGTCCGGCCCCAGAACTTCGAGCTGGTGAAGCAGTTTGTGAACCGCATTGTGGAT
CTGCTGGAAGTGTCCCCCGATGGCACACATGTGGGGCTGGTGCAGTACTCTAGCCGTGTCCGCACCGAGTTCCCCCTCA
ACAAGTACCACAGTGCAGAGGAGATCAAGGCGGCGGTGATGAAGATGGAGTACATGGAGAAGGGCACCATGACGGGCTT
GGCCCTCAAGCACATGGTAGAGCACAGCTTCTCTGAACTGGAAGGGGCCAGGCCACTCTCCCACAATGTGCCCAGGATC
GGGCTCGTCTTCACGGATGGACGCTCCCAAGATGACATCTCGGAGTGGGCACAGAGAGCTAAAGAGTCAGGTATCGTCA
TGTTCGCTGTGGGTGTTGGCAAGGCAGTGGAAGAGGAACTGAGGGCCATCGCCTCTGAGCCGGTGGAGCAGCACTTCTC
CTACTCAGCAGACTTCACCACCATGACCCACCTCGTGGAGAACTTCAAGCTAAACATCTGCCCAGAGGAGGGCAGAGGA
GAGACGGAGATCCGCAGCCCATGTGAGTGTGAGGCGTTGGTGCAGTTCCAGACAAACACCGTGGCCATCCTGCAGAGCC
TGACTGAGAGAATTGCTCAGATGACAGCCAGACTGGAAGCCCTGGAGAAGCAGATTGCCCTCAAGAAGTGATCCTCGCG
GCGGGTCGCAGGGCTCAGAGGGGACCTACAGTAGCTACGTGGCATTGTTATTGATAGATTATGTAAAGCATCGTTGCTT
GTCCTCGTATCACAAAATCCCAAGGGGATGTGGAGTGTATTTAAAAAAAAAAAAACTTAAAAAAAAAAAAGAGGGGAAA
AAAGAACTCGAGCAAAAGCCGTGCTGCAAAGCATGTGGGTTCAACCTGTGCTGTTGCCTCATCCCTCCAGCCTGGCTGG
TCTGGGACAAGGTGGGCAGGCTTTGGAAGAGGAGTCGTGACACAGCTCCTGATGCAGCTGCGACGGGCAGCAGCCCCTG
CACCGCTCCCTGTGCTGCTTTGCACGAGGAAACCCAGCAGTGGCAGCACCCAGAGAGCTGCTGTGGGCAGGATGAGCTT
CTGCAGCAGGACTGCATGTGGGCTGAGTGCTCCCCGGCCCCACAGCCGTGGGGATGCAGCCCATGGGAGATTGGCAGCA
GGATCCCCTCGTTGCTGCATTGGCAGAATTCTTCTAGAATCGATCATTATCTTGTTTTATCGGGTTGGTTTTTTTTAAT
CACGTAGCAAAATGGTAATAATTCTCCCTATAAATATCTACGTGTGTGTGTGTATATATATATATTTTATTGTGAGAAC
AGGGTAGTGCTATTTTTAAACCCTTATTTTATATATGGAAATTTCTATCATGACAATAAACACCCTGGAGATTT
CitationBandyopadhyay A, Kubilus JK, Crochiere ML, Linsenmayer TF, Tabin CJ. Identification of unique molecular subdomains in the perichondrium and periosteum and their role in regulating gene expression in the underlying chondrocytes. Dev Biol. 2008 Sep 1;321(1):162-74. doi: 10.1016/j.ydbio.2008.06.012. Epub 2008 Jun 16.
CopyrightCopyright © 2013 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI XM_425698.4
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-38
stage 34
stage 34
stage 35
stage 37
stage 37
stage 37
stage 38
stage 38
Leg Bones
 

Mouse

Emage
MGI GXDMGI:1328314

Frog

Xenbase990977

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050208-64
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona