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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BAMBI
BMP and activin membrane bound inhibitor

Gene

Official Symbol	BAMBI
Official Full Name	BMP and activin membrane bound inhibitor
CGNC ID	5561
also known as	BMP and activin membrane-bound inhibitor homolog
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001195401
Polypeptide	NP_001182330
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.35455

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	25805	ENSG00000095739		MIM:604444
Mouse	68010	ENSMUSG00000024232	All phenotypic alleles (4):Targeted, knock-out(3) Targeted, other(1)	MGI:1915260
Xenopus	493556, 394401			495358
Zebrafish	83496, 431736	ENSDARG00000055381, ENSDARG00000056406	ZDB-GENE-010416-1, ZDB-GENE-040704-30	ZFIN:ZDB-GENE-010416-1, ZFIN:ZDB-GENE-040704-30

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	428413
Ensembl Gene
KEGG	gga:428413

Entry 1

GEISHA Id	BAMBI.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TCAGATGCTACTGTGATGCCGC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGACCAAAATGAGCCCACCAGC	cDNA Template Length	412
Complete cDNA Template Probe	show `TCAGATGCTACTGTGATGCCGCACACTGTGTTGCGACCGGCTATATGTGCAAATCCGAGCTTAGCGCCTGCTTCTCCAG ACTGCTTGATCCTCAGAATACACATTCCCCACTTACTCATGGCTGCTTGGACTCTATTGCAAGCACAGCTGATATCTGC CAAGCCAAACAGGCACAAAACCACTCTGGCACCACCGTGTCCACATTGGAATGCTGTCATGAAGATATGTGCAATTACA GAGGACTGCACGATGTTTTGTCTCCTTCCAAGGGTGAGACTTCAGGACAAGGGAGCAGATATCAACATGACAGCAAGAA TCTTATCACCAAGGTACAGGAACTGACCTCTTCGAAAGAATTATGGTTCAGGGCAGCTGTAATTGCTGTTCCTATAGCT GGTGGGCTCATTTTGGT`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Blood Islands
Early Mesoderm
Epiblast
Extraembryonic Mesoderm
Headfold
Hypoblast
Lateral Plate Mesoderm
Primitive Streak

7-12

stage 7

stage 10

stage 11

Amnion
Anterior Intestinal Portal
Area Opaca
Blood Islands
Endoderm
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Heart Tube
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Primitive Streak
Sinus Venosus
Ventricles
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

19-24

stage 19

stage 22

stage 24

Allantois
Amnion
Cranial Ganglia
Ear/Otic Placode
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Hindgut
Leg AER
Liver
Lung
Midbrain
Nasal Placode/Nerve
Nephric Ducts
Neural Plate/Tube
Notochord
Outflow Tract
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somatic Mesoderm
Spinal Cord
Ventricles
Wing AER

stage 25

Allantois
Amnion
Aorta
Cranial Ganglia
Ear/Otic Placode
Eye
Forebrain
Head Mesenchyme
Hindbrain
Hindgut
Leg AER
Liver
Lung
Midbrain
Nasal Placode/Nerve
Outflow Tract
Pharyngeal Arches and Clefts
Somatic Mesoderm
Spinal Cord
Ventricles
Wing AER

Entry 2

GEISHA Id	BAMBI.Alev.2010	Data Source	Publication
Complete cDNA Template Probe	show GATCGCCATTCCAGCTACATCTTCATCTGGCTGCAACTGGAGCTGTGCGCCATGGCCGTCCTGCTCACCAGAGGTGAAA TCAGATGCTACTGTGATGCCGCACACTGTGTTGCGACCGGCTATATGTGCAAATCCGAGCTTAGCGCCTGCTTCTCCAG ACTGCTTGATCCTCAGAATACACATTCCCCACTTACTCATGGCTGCTTGGACTCTATTGCAAGCACAGCTGATATCTGC CAAGCCAAACAGGCACAAAACCACTCTGGCACCACCGTGTCCACATTGGAATGCTGTCATGAAGATATGTGCAATTACA GAGGACTGCACGATGTTTTGTCTCCTTCCAAGGGTGAGACTTCAGGACAAGGGAGCAGATATCAACATGACAGCAAGAA TCTTATCACCAAGGTACAGGAACTGACCTCTTCGAAAGAATTATGGTTCAGGGCAGCTGTAATTGCTGTTCCTATAGCT GGTGGGCTCATTTTGGTGCTCCTTATCATGCTGGCCTTGCGGATGCTCAGGAGTGAAAATAAGAGACTGCAAGATCAAC GACAGCAAA
Citation	Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
Copyright	Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
Comments	The probe for BAMBI was amplified by PCR using the following primers: 5′-GATCGCCATTCCAGCTACAT -3′ and 5′-TTTGCTGTCGTTGATCTTGC-3′.

Stage

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stage 4

Primitive Streak

Entry 3

GEISHA Id	Bambi.Afrakhte.2004	Data Source	Publication
Citation	Afrakhte M, Schultheiss TM. Construction and analysis of a subtracted library and microarray of cDNAs expressed specifically in chicken heart progenitor cells. Dev Dyn. 2004 Jun;230(2):290-8.
Copyright	Copyright © 2004 Wiley‐Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (Acc. # NM_001195401.2).

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Early Mesoderm
Headfold
Primitive Streak
extraembryonic mesoderm

31-44

stage 44

Data from NCBI Unigene EST Profile
Unigene ID: Gga.35455