Geisha

home

|

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

APIP
APAF1 interacting protein

Gene

Official Symbol	APIP
Official Full Name	APAF1 interacting protein
BirdBase ID	BB-GG554
CGNC ID	5921
also known as	methylthioribulose-1-phosphate dehydratase\|probable methylthioribulose-1-phosphate dehydratase
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001031547
Polypeptide	NP_001026718
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.22458

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	32334			FBgn0030518
Human	51074	ENSG00000149089		MIM:612491
Mouse	56369	ENSMUSG00000010911	All phenotypic alleles (2):Targeted, other(2)	MGI:1926788
Xenopus	548429, 414636			978322
Zebrafish	447941	ENSDARG00000003132	ZDB-GENE-040912-128	ZFIN:ZDB-GENE-040912-128

Gene Ontology

Molecular Function	methylthioribulose 1-phosphate dehydratase activity, zinc ion binding
Biological Process	apoptotic process, L-methionine biosynthetic process from S-adenosylmethionine, more...
Cellular Component	cytoplasm

Links to other databases

Entrez Gene	428860
Ensembl Gene
KEGG	gga:428860

GEISHA Id	APIP.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AACTGGTGGAGGAATCAGCCTG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGAAGTCAAATGAAGCAGCGGTAGAG	cDNA Template Length	948
Forward cDNA Template Probe	show `CATGTTTCTCCCCATACATAAACTCCATGACGTCTGACCAGAACAGCGCAAGAATCTGGGTATTCTTCCATTGCTTTTG CCATTCTTTCCTTGAGATCCTTCTCTTCTGGTGTATTCTCAATAATGGGAACCACCAGCGTATCATCATAGCGGTAATA GCCTCCTGAAGAACACTTCTGGATTCCTTTTATCATCTCCTGATGGGTAATAGTGAACTCATTCCCTGGGTAAAGAAGG GTAGCCATAACAGCAGCCTTGGAATGAGTATGTATCACTGCACCTGCTCCCCTCATAGTGTAGGCATTCATAAAAAGAG GTGTGCACTGGCTTTTCTTTAGTTTCTTGTGTGCTGGGGGACCACTGATGTCCTGCTCGTTCATGTCACAAACAAACAT ATCTTCTGGCTGTATTCTTTCCTTCTGGACTCCTGAAGGAGCAATATAGATTTCATTCCCGTGTTTCAGGCTGATTC`

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

7-12

stage 8

stage 10

Forebrain
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Sinus Venosus

13-18

stage 14

stage 17

stage 17

stage 17

Dermatome
Ear/Otic Placode
Esophagus
Eye
Forebrain
Foregut
Head Mesenchyme
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Myotome
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Sinus Venosus
Somatic Mesoderm
Wing Mesenchyme

19-24

stage 19

stage 20

Allantois
Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Wing Mesenchyme

25-26

stage 26

stage 26

stage 26

stage 26

Foregut
Head Mesenchyme
Leg Mesenchyme
Liver
Lung
Mesonephros
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Tail
Wing Mesenchyme

Data from NCBI Unigene EST Profile
Unigene ID: Gga.22458

Mouse

Emage	MGI:1926788
Eurexpress	MGI:1926788
MGI GXD	MGI:1926788

Frog

Xenbase

Fruit Fly

BDGP	FBgn0030518

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-040912-128

Home

|

Contact

University of Arizona

NICHD

National Institute of Health

Hy-Line

© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona