Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

HOXB2
homeobox B2

Gene

Official Symbol	HOXB2
Official Full Name	homeobox B2
CGNC ID	53816
also known as	homeobox protein Hox-B2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642792
Polypeptide	XP_003642840
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3212	ENSG00000173917		MIM:142967
Mouse	103889	ENSMUSG00000075588	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:96183
Xenopus	100038155, 733446			478524
Zebrafish	30338	ENSDARG00000000175	ZDB-GENE-990415-103	ZFIN:ZDB-GENE-990415-103

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	429940
Ensembl Gene	ENSGALG00000025774
KEGG	gga:429940

Entry 1

GEISHA Id	HOXB2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GATGAAGCACAAGAGGCAAACACAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGACGGGATGGGGTGATTGAATGC	cDNA Template Length	537
Forward cDNA Template Probe	show NCCGGAAANNNNNNNCAAAATAAGGGGAGATTGGGTTGTTTTGGGGTGACCCCTCTCGTTTGGAGAGCTGGAGCGGCTC GGGGTGGGACAGCTTGGGATAAACAAAAAAAAAAGGAGGGAGAGCCGGGGGGGACCCCTTTTGGAAATTTAAATTGTTG CAAATCTTGGGAACAAAGGGCCCGGGAAAAAAATCCCAAATTTCCCCCCAAAAAGGGAGGGGAACTCCCCAGGGATCCC TGCAAACCCGAAAAAACTTCCGGGCAGAATTTTCCCAAAAGAATGTTAATTTCCGGCACCAAAGGAAACCCCGGGTTCT GGGAAAACCCAACCCCCAAGGGGGGGGCCCCGGGCCAATCGTTCCCCCAAGGGTTGGGGGGTTCCTCGGCTTGCCCCCC CCGTTAGGGCCCGGGGAAGGGCCCCAACGGGGGGTTTTCCTCGCCCTCTTCCGGGGTTTCGTTGCCCTCTCCAAGGCGG GGGAAACCAATTCCCCCTCCGGGGGGTTTTTTGACCGGGTTTGCCCCCTGGGGCTTAACAAA
Comments	No expression detected at or before stage 4.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Early Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

7-12

stage 9

stage 10

Intermediate Mesoderm
Neural Plate/Tube
Rhombomeres

13-18

stage 13

stage 15

stage 17

Hindbrain
Intermediate Mesoderm
Lung
Myotome
Neural Plate/Tube
Rhombomeres
Somatic Mesoderm
Somites
Spinal Cord

19-24

stage 21

stage 22

stage 23

stage 24

Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Rhombomeres
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Section taken just above the heart.

stage 25

Anterior/Second Heart Field
Hindbrain
Lung
Myotome
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves

Entry 2

GEISHA Id	HOXB2.Barak.2012	Data Source	Publication
Complete cDNA Template Probe	show GAACCATCATCATCACTGCCATAAAAACTGAGGCCCTCAGATTTCTTCCTCTCTTCCCCTCCTCCTTCCTCCCCCCTCC CGCTTTTTAAACCCTGGGCCCTGGAAAAGCCATGAATTTTGAATTTGAGAGGGAGATCGGGTTTATAAATAGCCAGCCT TCGCTCGCAGAGTGCCTGACGTCTCTTCCCGCTGTCCTGGAGACATTTCAAACTTCATCAATCAAGGACTCGACATTAA TTCCTCCTCCTTTTGAGCAAACCGTCCTCAGCCTGAATCCTTGTTCCAGCAGCCAGGCAAGACCGAGGAGCCAAAAAAG AGCATCCCATGGCCTGCTCCAGCCTCAGCCTCCGGCACAGCCCGGCCCCTTGGCAGCGGAATTCCCCTGGATGAAGGAG AAGAAATCGTCCAAGAAAGCTACCCAGGCTCCATCCTCGTCTTCCTCTTCTTTCCCCCCATCATCTTCCTCGGTGCCGA TCCCCGCCGCAGGATCTCCTGCAGACACGCAGGGGTTGGCAGACAGCAGCGGCTCTAGGAGGCTCCGGACAGCGTACAC CAACACACAGCTCCTGGAGCTGGAGAAGGAATTCCACTTCAACAAATACCTCTGCAGGCCCCGTCGGGTGGAAATCGCG GCTTTGCTCGACCTGACCGAGCGACAAGTCAAAGTGTGGTTCCAGAACCGCAGGATGAAGCACAAGAGGCAAACACAGT ACAAAGAACCCCCCGACGGGGACATCGCTTACCCCGGCCTGGACGAGGGCAGCGAAGCCACGGATGAGGCCGAGGAGAG CCCCGCGTTGGGGCCGTGCCCGGGGCCGTACCGGGGTGCGCAGCCCGAGCAGCCCCGCAGCCCTCGGGGTACCGATCGG CCCGGAGCCCCCCCCTCGGAGCTCGGCTTTCCCGAGAGCCAGGGCTCGCCTTGGTTGCCGGAACTCAGCATCCTCTCGG CAGAGTCCTGCCTGCAGCTCTCTCCGGCTCTGCAGGACTCCTTGGAGAGTCCCCTCCACTTCTCGGAGGAAGATCTGGA CTTTTTTACCAGCGCACTTTGTACCATAGATCTGCAACACTTCAATTTCCAATAGCGGTCCCCGCCTGTCTCTCTCTCT TTTTTTTTTTGTTTATCCCTTTCTGTCCCACCCCGAGCCGCTCCAGCTCTCCAAACGAGAGGGGGTCACCCCAAAAACA AACCCAAATCATCCCGCATTCAATCACCCCATCCCGTTCGACGGACATTTTAAAGCTCTTCAAGTTGAGGGACCCGAAT CTCAGCCGCAGTATTTATTTGAGAAGGCTCATATAAAAAGAGCTTTTTATTTACAAGATAAATTAGTTGCTAAATGGTA GGCTTGTTCCTTATTTATTTTAAAGGAGGCACCCAATAGTTTCCATGCGCATCAGAGATGACCGCCCTCGAGAGAAAAC CATTGTGAATCCTCCAAGCGACTTTCTCAGGAATCAGAATGAGCCTTTTAGATTTCTTAAGGAAATAATAATGAGAAAA AAGCAGAGGAATTTTCGTTCCTCCTTTTTAAGTTTTAGATGTAGATTATTTATTCAGATCCTTTAATAGCAAATGGCAA ATTATTTATTGTACATTATTTTCATAGAGTAAATAAATGCCTTTATAAAACCGAGGGAA
Citation	Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_003642792.1).