GEISHA - A Chicken Embryo Gene Expression Database
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HOXD3
homeobox D3

Gene
Official SymbolHOXD3
Official Full Namehomeobox D3
CGNC ID16351
also known ashomeobox protein Hox-D3
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
Sequence Information
Genomic
RNAXM_428765
PolypeptideXP_428765
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human3232ENSG00000128652MIM:142980
Mouse15434ENSMUSG00000079277All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(3) MGI:96207
Xenopus100038058, 100036911478461
Zebrafish30349ENSDARG00000059280ZDB-GENE-990415-120ZFIN:ZDB-GENE-990415-120
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene431212
Ensembl GeneENSGALG00000023420
KEGGgga:431212
GEISHA IdHOXD3.Barak.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGATCTTTGAGCAGGGGCCGCGGGCCTTGGCGATCGCAGAGAGCAAGATGCAGAAAACCGCCTACTACGACAACGCGG
GGCTCTTCGGGGGCTACACGTACAGCAAGGCCGACGCCTACCCCTACGGCGCGGCCCAGCAGCCCTACGGCGCGGCCGG
CCTGGACGGCGAGTACCCCGGCTCCGCCTGCTCCGTGCAAGGCTCCGCGCCCGGCCGCGGCCCGGCCCCCAAGGGCCCC
GAGCTGGGCGGCAGCTGCATGCGAACGGCCGGGGGCGGCCCCGGGGGCAGCCAGCCTCCCGGCATCGGCGAGCAGCAGC
CCCCGGCTCTGCCGCCGTCCTCCCCGCCCAATCCCTCCAGCGCGCCCCCCCCGAAAAAAGCCAAGGGGGGGCCCAACGC
CTCCGGCTCGGCCTCCGCCACCCTCAGCAAGCAGATATTCCCCTGGATGAAGGAGTCCCGGCAGAACTCCAAGCAGAAA
AGCACCTGCCCCCCCTCAGGAGAGAGCTGCGAGGACAAGAGCCCCCCCGGACCGGCCTCCAAGCGGGTGCGCACCGCCT
ACACCAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGTGCCGGCCGCGCCGCGTGGAGAT
GGCCAATCTGCTGAACCTGACCGAGCGGCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAAGTACAAAAAGGACCAG
AAAGCCAAAGGCATCATGCACTCCCCCGCCGGCCAGTCCCCGGAGCGCAGCCCCCCGCTGAGCGGCGCGGCCCACGCCG
GCTACTCGGGGCAGCTGCCCGCCGTCGGCGGCCTGGGCTACGACGCGCCGTCGCCCACGCCGTTCGCCAAGGCGCAGCA
GAGCATGTACGGGCTGGCCGCCTACACGGCGCCGCTGGGCGGCTGCCTGCCGCAGCAGAAGCGCTACGCGGGCGCGGAG
TACGAGCCGCACCCCCTGCAGAGCGGCGGCGGCTTCGGCAACCCCGGCCTGCAGGGCAGCCCCGTCTACGTCGGGGGCA
ACTTCGTGGACTCGATGCCGGCCTCGGGGCCCGTCTTCAACCTGGGCCACCTGCAGCACCCCTCCTCCGCCAGCGTGGA
CTACAGCTGCGCCGCGCAGATCCCCGGCGGCCACCACCACGGACCTTGCGACCCCCACCCCACCTACACGGACCTCTCC
TCGCACCACGCGTCTCAGGGACGGCTGCAGGAGGCCCCCAAGCTCACGCACCTGTAGCGGCCGGGCCGGCGCCGGCGAG
CGGAGCGGGCTCGCCTCTATTACCTCACTCCTCCGACGGGACGGGGCCGACGGGGCGGGTGCGTGCCCCCCGGGGCCGC
CCCTTTTGCTGCTCCGAGCTGCTCGGAGCACGGCAGTGCAATACGCCGCGACCCGGGGACTGGTAGCTGGTAGCGGTGT
GCCCGAGGTAAGTCGTAGGGATCACGTAGAGGTAGCAGCGCGTCGCGCTGAGGTGTGTTAGAGCAGCTGTGAGCGCCCA
GCTTATTTCCGACGAGTTAATTTATGAATTCCTCCGTAACGTAAGGATCGCATCGGACTAAACGATACCTATTTATTAT
TTGAAAGCGAGACATTTTTGTATCACTGATTATTTATCCTCGTCTTAATGTATTTATGTGGCTATTGGTAGAGTTTCTT
CGCCGACACTCGGGAGCCCGACGCAGGGCCGCCCCGCCCGTCAGCACGCCCGGCCCGAGCCGTTGGGAGCGTAGTGGTG
AGCAGTCGTAACCGTGGCTGGTGTTCGTAGTTTGTGTAAGGATTAATTAAGACAGCGAGTCGTAAGTCATTAATAGGGT
GAAACAAACCGCGGCGTCACGCAAGGAGCCGTTACACTTCACGAAGAAAGAAGAAAAGGGAATTATTTCTCGGGTATTT
ATTTCGCCGGGCCGGCCCCGCGGTGGGTGCAGAGCCGGCCCTGGCCGCGGAGCCTCGCGCCTATTTATTGACCGGGTAG
AAGCGCACACCTTCTTGCGGTGGGCTATTTACTTTTTCTATTTTTTTTTTTAATTGCATTCTGGCTATCTGGGATAGGA
AAGAAATTAGAAGCTTAGCGGG
Citation Barak H, Preger-Ben Noon E, Reshef R. Comparative spatiotemporal analysis of Hox gene expression in early stages of intermediate mesoderm formation. Dev Dyn. 2012 Oct;241(10):1637-49.
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_428765.3).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
stage 6
stage 6
Intermediate Mesoderm
Lateral Plate Mesoderm
Primitive Streak
 
7-11
stage 7
stage 7
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 11
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
 

Mouse

EmageMGI:96207
MGI GXDMGI:96207

Frog

Xenbase478461

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990415-120
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