Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

SMOC1
SPARC related modular calcium binding 1

The human orthologue of this gene is associated
with the following human disease:

Microphthalmia with limb anomalies

Gene

Official Symbol	SMOC1
Official Full Name	SPARC related modular calcium binding 1
CGNC ID	7159
also known as	SPARC-related modular calcium-binding protein 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_001231760
Polypeptide	XP_001231761

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64093	ENSG00000198732	MIM:206920	MIM:608488
Mouse	64075	ENSMUSG00000021136	All phenotypic alleles (3):Transposon induced(1) Targeted, other(2)	MGI:1929878
Xenopus	100145733, 100233223			989093
Zebrafish	100529120		ZDB-GENE-110310-7	ZFIN:ZDB-GENE-110310-7

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	768688
Ensembl Gene
KEGG	gga:768688

GEISHA Id	SMOC1.Alev.2010	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCGCCTTGCTCGCGGCCTTCCCTGTCTTGGCAGTGCCTCCTGCCGCAGCCAAGGGCTCTTTTTTAATAAGCGACC GTGACAGAGACCCTCAGTGTAACCTGCATTGCTCCAGGTCCCAGTCCAAACCACTCTGTGCCTCTGATGGCAGAACGTA TGAGTCCATGTGTGACTACCAGCGAGCCAAGTGCCGGGAGTCAAGCCTGAGTGTGACACATCGTGGCCGGTGCAAAGAT GCTGGCCAAAGCAAGTGTCGATTAGAGAGAGCTCAAGCACTGGAACAGGCAAAGAAGCCCCAGGAAGCAGTCTTCATCC CAGAATGCAATGAGGATGGGTCATTCACGCAGGTACAGTGCCATACCTACACTGGATACTGCTGGTGTGTGACACCTGA TGGCAAGCCTATTAGCGGCTCTTCTGTACAGAACAAAACTCCTGTATGTTCAGGTTCTGTAACTGATAAACCGTCAAGC CAGGGTAACTCAGGGAGGAAAGATGATGGGTCGAAGCCGACGCCGACCATGGAAACCCAGCCTATTTTTGACGGAGAAG AAATCACAGCACCCACCCTGTGGATTAAGCACTTAGTCATCAAAGATTCCAAACTGAACAGCTCCAGTATAAGGAATTC AGAGAAAGTTCACTCCTGCGACCAGGAAAGACAGAGCGCGCTGGAGGAGGCCAGGCAGAACCCCCGCGAGGGTATCGTC ATCCCCGAGTGCGCTCCGGGAGGGCTCTACAAACCAGTGCAATGCCACCAGTCCACCGGATACTGCTGGTGCGTCCTGG TGGACACCGGCCGCCCTCTGCCCGGTACTTCCACTCGCTATGAGACTCCAGTGTGTGAAAGTGATGCCAGGTCGAAGAG TACAGAGATTGATGATCCATTCAAGGACAGAGAACTTCCAGGCTGCCCAGATGGGAAGAAAGTTGAATTTATCACCAGC TTACTCGATGCTCTCACTACGGACATGGTACAGGCTATTAACTCAGCAGCACCTACTGGGGGTGGGAGGTTCTCTGAGC CAGACCCCAGCCACACGCTGGAGGAGCGAGTGGTACACTGGTACTTCAGCCAGTTGGACAATAACAGCAGCAATGACAT CAATAAGCGAGAGCTGAAGCCTTTCAAGCGCTATGTGAAGAAGAAAGCCAAGCCCAAGAAATGTGCCCGACGTTTCACT GACTACTGTGACCTCAACAAGGACAAGTCTATCTCCCTTCAGGAGCTGAAAGGGTGCTTGGGAGTCAGCAAGGAAGGAG GTAGCCTGAGCAGTTTCCCCAGTGGAAAAAGACAAGGCCTTAACCCTTTCATAGGCCGCTTGGTGTAGCAGCAGCAGAA GACAGAAGGGAAGGCAGGAGCCGACCCAAAGGAAGGAAAGATACAGCGACAGATGGACACCTTGCTTCTTATGAGCAAG CATGCAGCATCAGCAACATCCAATGTAGCAGAGGTGGCACCCAGAACGTTTGCACTTTCTAATAATTGGTTTGGGTTTG TTTTTAATTTCTTTTCAATGCCATTATCTAATACTTTGGAGAGCGGGGGGAAACAGGATCATGACTTTTTAAAATTGGA ACAGCTACTGATGACTTAAAATTGAGTTCACTGGGACTCGAAGAAAGAGAATTTTATATACTGTATATAAATATGTATG TAAATTGTACAGTTGTCTTGTACAGGGGTTGGAGTCACTGTTCTGTTCCTCCCTTTGCTTTTGAAGGCTGTTAGGGTTA GAGGGACACTTTGCCTTTAATGGATTACAGTAATGCTTTCATTTCTGCCATCTGATCCATCATTCAGTTGCAAACCGAT CTCTTACCGTCCCCACGCATGAAGGAGTAAGCATATCAGCATGACCTGTGCACACAGTGCCCCACATACTAAATGCTTC TTGAGAACCCCCTCTTTGATTACTGTGCAGCTCTGTGCAAGTCACAGGCGTCAGGACTTCTGAGAGAGCATGGAGTTGT GCACTGCAAAGCTCCTCAGAGTAGGGATTGGAAAGGGTTGTATTAAGGAAATGTAGAAATAGTTTCTGCACTCGTTGCA GAATGGTTAGAAATGAATTGCAAATGCATTGCTATTCAGGCTCAGAAGACATGCTTAGCAAAGATGTGCCATGTCCTGG GAATCTAATGCTATTGGAAGGGCATGGAAACCATAGACCCTGGTAGAATCAGCAGAGTGATGTCATGCATCTTCTTCTC TGACACAGTGTTCATCTATATAAGCAATAGAAATACTGAGGAATCAGCAAAAGGCAGCATCAGACTGCCTGTTACTTTG CTGAAGAGCAAAGAGCGAATTTGTCAGTGCAGAAAGACACGATCATGCTGCTGGTTCCCAAGAGTCTGCTTTTACTTGT GCTTCAACTCTGCAGCTTGGGCCATGCTTCTGGTAAAGGATTGCCTGCAACGACTGATCTTATCTTTGGTGGCTCCTCT CCTGCACAGGGGACAGCCTGTCTAGCTTTGATTACCTACTTCTCCTGATTCTCTGGTATCAGTATCTCTTGTGCTTTTG TACTTTAGTGGCACATTTCAGTAACAGCAAAGGCTTGGATTGAAGGGCTTGGTGCTCCTGGAGGACAAGAGCTGTTTCA AACACCTGCAGTTTTCCCAAACTTGTTGCTTACTTAACTTCAGTCAGATGCAGCTGTAAAGTCAGCAGATCTGCTATCC TGGGCTTGGACAGAGTGCGATGGGACACGCTGTGCTTTGCTTTGTGCATTTTCAGTCTCCAGCAGCACTTGCCCATTCC TAGAG
Citation	Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28.
Copyright	Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #XM_001231760.2).