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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXD10
homeobox D10

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	HOXD10
Official Full Name	homeobox D10
CGNC ID	56632
also known as	Chox-4d, homeobox protein Hox-D10\|Hox D10
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234538
Polypeptide	XP_001234539
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	3236	ENSG00000128710	MIM:142984	MIM:142984
Mouse	15430		All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1)	MGI:96202
Xenopus	100038085, 399032			485203
Zebrafish	30404	ENSDARG00000057859	ZDB-GENE-990415-116	ZFIN:ZDB-GENE-990415-116

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	771246
Ensembl Gene	ENSGALG00000009270
KEGG	gga:771246

Entry 1

GEISHA Id	HOXD10.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AGACATTGGGACTTATGGGATGC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGTTTCCACTTGAGAGACTTTAGCCG	cDNA Template Length	530
Forward cDNA Template Probe	show CGNCCTGGCCGTTCGGGTTTTCATTCATTTTCTTTTCCATCTGAAGTTGAGAAGATAGCTGCGGTTTGGAGCTGCCGCG CAGGGTTTAACTGTAACATTACGGTTGAACTCGTTTCAGGGCTATTATTGTACTCTTGGGTTTTCCCAGTGGCGTAGGT CTGGCTCAGTCTAAAATATCCTGGGACGGGAACCTCGGGGTTCTCAATGGGGCATGATTCAGACACCAGCCTCTGGTAG GAAGGGACGTCTGAAGAAATGAGTTTGGTTCTCTTATCGGAATACATGCAGCAATTGCTTTCTTCCTTAATATTTGTAG TGAAGGAACAAGTGGGGACCTGCTGTGTAACAGGTTGCTCTATTCGACAAGATCTGTTCGGATCTGTCCAACTGTCTAC TTGAGGTATATAAGGATGTACATTCATACCCATATTTTGGTGATTAACTTCTCTTTTAGCCAGAGACGGTAGGAGTCCA CAGGTTTGCATCCCATAAGTCCCCAATGTCTA

Stage

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Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

Low level expression.

4-6

stage 4

stage 5

Area Opaca
Early Endoderm
Epiblast
Extraembryonic Mesoderm
Primitive Streak

Low level expression.

7-12

stage 7

stage 9

stage 11

Blood Vessels
Ectoderm
Extraembryonic
Extraembryonic Mesoderm
Forebrain
Head Mesenchyme
Heart
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Spinal Cord

13-18

stage 17

Lateral Plate Mesoderm
Spinal Cord
Tail

19-24

stage 19

stage 21

Forebrain
Foregut
Hindbrain
Leg Mesenchyme
Lung
Midbrain
Sclerotome
Wing Mesenchyme

stage 25

Widespread Expression

Entry 2

GEISHA Id	HOXD10.Winslow.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAG AAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATC TTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGC TGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCC CCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTA CAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCT CAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTC CCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAA GGAGACTAAAGGTCTGTATTACCGAGCTTGA
Citation	Winslow BB, Takimoto-Kimura R, Burke AC. Global patterning of the vertebrate mesoderm. Dev Dyn. 2007 Sep;236(9):2371-81.
Copyright	Copyright © 2007 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538).

Stage

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Location (click to highlight)

Comments (click to highlight)

stage 25

Leg
Tail
Wing

Entry 3

GEISHA Id	HOXD-10.Reid.2002	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCTACCGTCTCTGGCTAAAAGAG AAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGTTGGACAGATCCGAACAGATC TTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATATTAAGGAAGAAAGCAATTGC TGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAGGCTGGTGTCTGAATCATGCC CCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCCACTGGGAAAACCCAAGAGTA CAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCTCCAAACCGCAGCTATCTTCT CAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAAAGTCTCTCAAGTGGAAAGTC CCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCCAGCCCCGAGGTCCAGGAGAA GGAGACTAAAGGTCTGTATTACCGAGCTTGA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538).

Stage

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Location (click to highlight)

Comments (click to highlight)

31-44

stage 35

stage 44

Dermis
Feathers/Scutae
Surface Ectoderm

Comparison of several genes

Entry 4

GEISHA Id	Hoxd-10.Nelson.1996	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCTTTCCCAACAGCTCTCCTGCCGCTAATACTTTTTTAGTAGATTCTCTCATCAGTGCGTGCAGGAGTGACAGTT TCTACTCCAACAGCGCCAGCATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCT ACCGTCTCTGGCTAAAAGAGAAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGT TGGACAGATCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATA TTAAGGAAGAAAGCAATTGCTGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAG GCTGGTGTCTGAATCATGCCCCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCC ACTGGGAAAACCCAAGAGTACAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCT CCAAACCGCAGCTATCTTCTCAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAA AGTCTCTCAAGTGGAAAGTCCCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCC AGCCCCGAGGTCCAGGAGAAGGAGACTAAAGAGGAAATCAAGTCTGATACTCCAACGAGCAATTGGCTAACTGCAAAGA GTGGCAGAAAGAAGAGGTGCCCTTACACTAAACACCAAACACTGGAATTAGAGAAAGAGTTCTTATTCAATATGTATCT CACCCGAGAGCGCCGCCTAGAGATCAGTAAGAGCGTAAACCTCACTGACAGGCAGGTCAAGATTTGGTTTCAAAACCGC AGAATGAAGCTCAAGAAGATGAGCAGGGAGAACCGAATCCGAGAACTGACCGCTAATCTGACCTTCTCCTAAGGCGTTC CCGGGGGTGGCAACAGCGAGCAGTGGGCACGGCACCGCCGGTGCCACGTGGGGGAGAGACTGTGGCAGAACCGTCCTTT TCCTTTTATTTTCTGGTAGAATGTGACTCTTCGTCCTTCTTTTAGCGCTGCAAGTGAATATGTATTACTATGACGAGTA TATATAAAACCTAGCACGTGTAATTTATTTTTGTTCTCATCGTAATGCAGGGTAACTATTATTGAATATTATCATTTGG TCTTAACTTATTGGAACTGTCGAACATCCAAGCAATGTGACTTTTTTTTTCATGTTTTTACTAACAAAATGGTATTTAT GTGGGGCTGTTACACGGGCCATAACGTTTGGAGTACGTTCACTACTTTAAGAAACGGGGGGGGGGGGGGGAAACTTTGG GGGGGGGGGGAAAGAGAAGCACATCGCAATGTAACTATCCTCGCAAATGAACTTAGAGGTCGTCCTTCGTAAAATGGAA TCTTTCATTCCTCTCCATTGTAGACATTTTCTTGTGGTGCATATGTGGAATAGTAGTCGTTCAGCAGCAATATGTCCTT CTTGTGCATGTTCTGTTCGCATGTATAATGCAATAAACTCTGTAAACTACTGCGGTCCCTTTGGTTTTCTACAAACGTT CCCGGTGCGGATGCAGGTTGCTTTCCTGACCCTCCCTCGCCAGCGGCTCCTGGGCCTGGTGCTCCTTCTCCTCCTCGTT CTGCTCTTTGTGTGTCTCTGCCCGGGCTTCGGTCTTTCTTTTTCCCTTTTTCTTTGTTTTCTTTCCTTTCCTTTTCTTT CCCTTCCCTTTTTTTTTTATTATTTAGGGGTGGGGAGGAGACTGGGGCGGGAAATGATGTAAACCCGAATCAGTTATAG TTGTGCCTGTAAACAAATGATTAATTGATCGAACGTTGTGATGTTCGCAGTCTGACAATCAGAACGCAGAAACAGAACA AAAAAGGGAAAAAAATGGGGGAAAAAATAAAAAAGGAAAAGGAAAAAAAATGTAGAGAGAGAGGAGGGGAAAAAAAAGA AAGAGAGAGAAAAAAAAGTTGTAAAATATGATGACCCAAACTGGACATCCTCATCCAATCAGCTCATAAATGAGGTGCT CGCTGCATCACCCGAGGAGTTCAGCAGTGGGAACTCATTCCCTGGCCCTACACCGAGTGCTCCACGCACACAGAAAGAA AGGAGGTTCGCCCCAGCCCGTACCGACCCGTACGTGTGCGGCAGGGCCGCCCGCCATGCGCCCGCTGCCAGAGGAGTAA CAGAGGAGACTGAAACGCAGAGGAAAGGCGAGAGCGAGATGGGCAAAGCCGAACAGTAAAAATAAAAAGAGAAAA
Citation	Nelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
Copyright	Copyright © 1996 by Company of Biologists
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 19

stage 23

Leg
Wing

25-30

stage 25

stage 27

Leg
Wing

31-44

stage 44

Entry 5

GEISHA Id	Hoxd10.Yakushiji-Kaminatsui.2018	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCTTTCCCAACAGCTCTCCTGCCGCTAATACTTTTTTAGTAGATTCTCTCATCAGTGCGTGCAGGAGTGACAGTT TCTACTCCAACAGCGCCAGCATGTATATGCCACCTAGCACAGACATTGGGACTTATGGGATGCAAACCTGTGGACTCCT ACCGTCTCTGGCTAAAAGAGAAGTTAATCACCAAAATATGGGTATGAATGTACATCCTTATATACCTCAAGTAGACAGT TGGACAGATCCGAACAGATCTTGTCGAATAGAGCAACCTGTTACACAGCAGGTCCCCACTTGTTCCTTCACTACAAATA TTAAGGAAGAAAGCAATTGCTGCATGTATTCCGATAAGAGAACCAAACTCATTTCTTCAGACGTCCCTTCCTACCAGAG GCTGGTGTCTGAATCATGCCCCATTGAGAACCCCGAGGTTCCCGTCCCAGGATATTTTAGACTGAGCCAGACCTACGCC ACTGGGAAAACCCAAGAGTACAATAATAGCCCTGAAACGAGTTCAACCGTAATGTTACAGTTAAACCCTCGCGGCAGCT CCAAACCGCAGCTATCTTCTCAACTTCAGATGGAAAAGAAAATGAATGAAAACCCGAACGGCCAGGACGGCGCGGCTAA AGTCTCTCAAGTGGAAAGTCCCGAGCCCAAGTCCACGTTGCAAGACGAGAGGAGCTGCCTGCCCGAAGGCTCCGTGTCC AGCCCCGAGGTCCAGGAGAAGGAGACTAAAGAGGAAATCAAGTCTGATACTCCAACGAGCAATTGGCTAACTGCAAAGA GTGGCAGAAAGAAGAGGTGCCCTTACACTAAACACCAAACACTGGAATTAGAGAAAGAGTTCTTATTCAATATGTATCT CACCCGAGAGCGCCGCCTAGAGATCAGTAAGAGCGTAAACCTCACTGACAGGCAGGTCAAGATTTGGTTTCAAAACCGC AGAATGAAGCTCAAGAAGATGAGCAGGGAGAACCGAATCCGAGAACTGACCGCTAATCTGACCTTCTCCTAAGGCGTTC CCGGGGGTGGCAACAGCGAGCAGTGGGCACGGCACCGCCGGTGCCACGTGGGGGAGAGACTGTGGCAGAACCGTCCTTT TCCTTTTATTTTCTGGTAGAATGTGACTCTTCGTCCTTCTTTTAGCGCTGCAAGTGAATATGTATTACTATGACGAGTA TATATAAAACCTAGCACGTGTAATTTATTTTTGTTCTCATCGTAATGCAGGGTAACTATTATTGAATATTATCATTTGG TCTTAACTTATTGGAACTGTCGAACATCCAAGCAATGTGACTTTTTTTTTCATGTTTTTACTAACAAAATGGTATTTAT GTGGGGCTGTTACACGGGCCATAACGTTTGGAGTACGTTCACTACTTTAAGAAACGGGGGGGGGGGGGGGAAACTTTGG GGGGGGGGGGAAAGAGAAGCACATCGCAATGTAACTATCCTCGCAAATGAACTTAGAGGTCGTCCTTCGTAAAATGGAA TCTTTCATTCCTCTCCATTGTAGACATTTTCTTGTGGTGCATATGTGGAATAGTAGTCGTTCAGCAGCAATATGTCCTT CTTGTGCATGTTCTGTTCGCATGTATAATGCAATAAACTCTGTAAACTACTGCGGTCCCTTTGGTTTTCTACAAACGTT CCCGGTGCGGATGCAGGTTGCTTTCCTGACCCTCCCTCGCCAGCGGCTCCTGGGCCTGGTGCTCCTTCTCCTCCTCGTT CTGCTCTTTGTGTGTCTCTGCCCGGGCTTCGGTCTTTCTTTTTCCCTTTTTCTTTGTTTTCTTTCCTTTCCTTTTCTTT CCCTTCCCTTTTTTTTTTATTATTTAGGGGTGGGGAGGAGACTGGGGCGGGAAATGATGTAAACCCGAATCAGTTATAG TTGTGCCTGTAAACAAATGATTAATTGATCGAACGTTGTGATGTTCGCAGTCTGACAATCAGAACGCAGAAACAGAACA AAAAAGGGAAAAAAATGGGGGAAAAAATAAAAAAGGAAAAGGAAAAAAAATGTAGAGAGAGAGGAGGGGAAAAAAAAGA AAGAGAGAGAAAAAAAAGTTGTAAAATATGATGACCCAAACTGGACATCCTCATCCAATCAGCTCATAAATGAGGTGCT CGCTGCATCACCCGAGGAGTTCAGCAGTGGGAACTCATTCCCTGGCCCTACACCGAGTGCTCCACGCACACAGAAAGAA AGGAGGTTCGCCCCAGCCCGTACCGACCCGTACGTGTGCGGCAGGGCCGCCCGCCATGCGCCCGCTGCCAGAGGAGTAA CAGAGGAGACTGAAACGCAGAGGAAAGGCGAGAGCGAGATGGGCAAAGCCGAACAGTAAAAATAAAAAGAGAAAA
Citation	Nayuta Yakushiji-Kaminatsui, Lucille Lopez-Delisle, Christopher Chase Bolt, Guillaume Andrey, Leonardo Beccari, Denis Duboule. Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. PLoS Biol. 2018 Nov 26;16(11):e3000004. DOI: 10.1371/journal.pbio.3000004.
Copyright	Copyright © 2018 Yakushiji-Kaminatsui et al.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_001234538.5)