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LRRN1
leucine rich repeat neuronal 1| Gene | | Official Symbol | LRRN1 | | Official Full Name | leucine rich repeat neuronal 1 | | CGNC ID | 56905 | | also known as | LRCH4, leucine-rich repeat neuronal protein 1|leucine-rich repeats and calponin homology (CH) domain containing 4, Leucine-rich repeat neuronal 1 (Lrrn1), NLRR1 | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | | Gene Ontology | | Molecular Function | | | Biological Process | | | Cellular Component | |
| | Links to other databases | |
Entry 1| GEISHA Id | LRRN1.Garcia-Calero.2006 | Data Source | Publication | | Complete cDNA Template Probe | show NGGNATTTGGNGGGGNAAACATTTTNCCCCNGGNAAACCNTTTTNGCCCNTNTTTCCCCCCAAGTTTTTAANTCGCCCC
CNTTAAGGGAAAATTTGGTACCCCNCCCAGGTNCCGGTCCCGAAATTCCCGGGNTGGACCCAGGGGGCCGGGGCCTTTN
TCCTTAANACCAGGGATATTGATTTAANCTGAGTTNTTTTNGCCCTAAANATTCCCTGGACTTTTNCCAAAAAAAGGCC
CCCGGNGGGCCAAGGTTGCCAGCAAANTTCCAGCTTCCAACTTGCAAANCTTCATAAATTTGTTTTGAGAAAGTAATTA
TTGAGCAAGTGTCAAATGTTCANAGCAGGCCTNTTCTTCCCCCACCTTCCTGCAGCACTTGTGCAGNTGTNCCACAAAC
ACTCGGGTAACAACAAGCTTTCACTTGAGCCTCCTGTCCAAAGGGGTCGGCATACGGNAAGGGAAGCAGTGTNTGATGT
GTTCCTTGCCACTGGGGAAATTATGTGCCTGTTCTTCCCTGCAGACCTATTTGGCAGTTTTATGTCATTTGTTATCGTT
ATAGTGCAATGCTGTTAAAGAACAGCAAGAGAAAATGGCCTTATGACAGTCATATACTTCTGGATGTGCTGATCTGTAG
TATTTCAGGGGAGCTGATGTTGCTGGGGCTCTGGCAGANANATGCAGGTTCCCTGACAACAGCTCAACAGCCACAACAC
CCTGTTAGTGCCGCACATTNTGCACATACAGCCACCAGTGACATGTATTTTCAGCCTTGTAATCTATGCCCTTAGAGCT
CTGTACAGTTNTCCTGGAAAGTTAAAATTCTGCTAATAAAAGGAAAAAAAAAAACAACAGTGGGTAAGAGATTAATGAC
ATGTGGCATATAATCTTAGCAAATAACCTTCAGCCTTGTCCTAGCAATTCTGTGCTTGCAGTTTGTTGTAAGCAAAAAT
AAAAATATTCTCTTTGCCTAAAAAAAAAAAAAAAAAAAAAAAAA | | Citation | García-Calero E, Garda AL, Marín F, Puelles L. Expression of Lrrn1 marks the prospective site of the zona limitans thalami in the early embryonic chicken diencephalon. Gene Expr Patterns. 2006 Oct;6(8):879-85. Epub 2006 Feb 28. | | Copyright | Reprinted with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved. | | Comments | Sequence below was obtained from NCBI using the GenBank Accession No. (BF724065) and primers given in the publication: Lrrn1 forward primer, 5'-TGCTAGGACAAGGCTGAAGG-3'; reverse primer, 5'-CCACAAACACTCGGGTAACA-3'. This sequence is the reverse complement of the 3'end of the gene. The sense strand is shown below. |
Entry 2| GEISHA Id | NLRR1.Tonegawa.2003 | Data Source | Publication | | Forward cDNA Template Probe | show GCGGCTCGAGGGGATCGATGTTTGCTGTAATTAGCCTTGCCTCCATTTCTGTTTACATTGCAAAAAGATTTAAGAGAAA
AAACTACCACCATTCACTGAAAAAATATATGCAAAAGACCTCCTCAATCCCCCTGAATGAGCTCTATCCTCCACTTATT
AATCTCTGGGAAGGCGACAGTGATAAGGACAAGGATGGTTCTGCAGAGACCAAGCCAACCCAAGTCGACACATCCAGAA
GCTATTACATGTGGTAACTCAGAGGATATTTTGCTTCTGGTAGTAAGGAGCACAAAGACTTTTTTGCTTTATTCTGCAA
AAATGAGAAGTTGAAGACTTTTGTATTTTTGACTTTGCTAGTTTGTGGCAGAGTGGTGAGGACAGGTGGATATTTCAGA
ATTTTTTAGTATAGCGTATCGCAATTGTTTGACACAAATGGCAGCTTCACCTAGCTTCAAGAGTTCTTTTTTTTTTCCC
CTTTCTCTCTTTTTTTTTTTTTTTTAAGGTTATGGGGCTAAACTTAAGGCGGGCCTAACTACAGGGGCTGAATAAAATT
AAGGAAAGGCGGGGGTTACCCGGGTGATCCAAAAGTAGCAAAACCCCATTCTTCTGAAGCCATCAGTAGAGTCCAGTAT
CTGGCAAAGCTAACATACCAGTTTGGAACCCGGCTTTGAACTAGTTCGGAAGGCGGGCCTGAGGACTCGAGCTGAGAAA
AGGGGGAC | | Citation | Tonegawa A, Kasai T, Takahashi Y. Systematic screening for signaling molecules expressed during somitogenesis by the signal sequence trap method. Dev Biol. 2003 Oct 1;262(1):32-50. | | Copyright | "Reprinted from DEVELOPMENTAL BIOLOGY, 262, Tonegawa A, Kasai T, Takahashi Y. Systematic screening for signaling molecules expressed during somitogenesis by the signal sequence trap method. 32-50, Copyright (2003), with permission from Elsevier".
Copyright © 2003 Elsevier B.V. All rights reserved. |
Entry 3| GEISHA Id | LRRN1.Andreae.2007 | Data Source | Publication | | Complete cDNA Template Probe | show AAAAACTACCACCATTCACTGAAAAAATATATGCAAAAGACCTCCTCAATCCCCCTGAATGAGCTCTATCCTCCACTTA
TTAATCTCTGGGAAGGCGACAGCGATAAGGACAAGGATGGTTCTGCAGAGACCAAGCCAACCCAAGTTGACACATCCAG
AAGCTATTACATGTGGTAACTCA | | Citation | Andreae, LC, Peukert, D, Lumsden, A, Gilthorpe, JD, Analysis of Lrrn1 expression and its relationship to neuromeric boundaries during chick neural development. Neural Develop. 2007; 2: 22. Published online 2007 October 31. | | Copyright | Copyright © 2007 Andreae et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. | | Comments | A fragment corresponding to the intracellular domain of the chick Lrrn1, including the translational termination codon, was generated by PCR with primers 5'-ACGGATCCAAAACTACCACCATTCAC-3' and 5'-CGCCTCGAGTTACCACATGTAATAGC-3' |
Entry 4| GEISHA Id | LRRN1.Tossell.2011b | Data Source | Publication | | Complete cDNA Template Probe | show GGCAGGCGGGCGGCAGCGCGGCGCCGCGCTGCGCTCCTCCCTTCTGTCCCTCCGCCTTCTCCCGCCGCGGATGTCGGCG
CCGCCGCTGCGTGGGGGAGAGGAGCGGCTGCGCGGGCAGCGCCCCCCCGGGTGCCGGAACGTCTTCAGGCACGGATTTG
TAGAAGATCCTGGAACACAGAGGAGCAGCTGAGAGCCTTCAGACAATTTATTGTCTTCTCTAACCTTACAGAATCAACT
TTCATCTTCTGGATGTCCAAGCCTTTCACACCAAATTTTAAGCTTTACCTTTCCTGCCTGGCAACAAATTACATTCTCA
GTCTGTTATTTTAAGGGGCTGGGAAGCTGAATTCACTAGCTGACCAGCATGGCTAAGATTAGATTAGTTTTAACTGTTT
GCCAGGTGGTGCTAGAATTGCTAACGAATTCATTAACTGAGTCTTCCGTACAGAGTAATGAATGTCCCCAGCTTTGTGT
ATGCGAAATCAGGCCATGGTTTACACCACAGTCAACATACAGGGAAGCCACAACAGTTGACTGCAATGACCTTCGTTTA
ACAAAAATCCCCAGCAATCTTTCCAGTGACACTCAAGTCCTTCTGTTACAAAGCAACAATATCGCAAAGACCACAGATG
AACTCCAACTGCTATTTAATTTAACAGAGTTAGATTTTTCACAAAATAACTTCACAAGTATCAGAGACGTGGGGCTCTC
AAATCTTACTCAGCTAACTACTTTGCATCTGGAGGAAAATCAGATCATGGAGATGACTGACTACTGCTTGCAAGACCTT
TGCAATCTTCAGGAGTTATATATAAATCATAATCAGATCAGCAGCATTTCTGCAAATGCATTCTCTGGCCTGAAGAATC
TTTTAAGATTACATCTCAACTCCAACAAATTAAAGGTTATTGACAGCCGTTGGTTTGATTCTACTCCTAACTTAGAGAT
TCTTATGATTGGAGAAAATCCAGTGATTGGAATACTAGATATGAACTTCAAACCACTCTCCAATTTAAGGAGTCTTGTT
TTGGCGGGTATGTATCTTACAGACATCCCCGGCAATGCCTTGGTAGGCTTGGACAGTCTTGAAAGTCTTTCCTTCTATG
ACAACAAATTGGTAAAAGTTCCTCAGCTCGCACTTGAGAAAGTTCCAAATCTAAAATTCCTGGATCTCAACAAAAATCC
AATTCATAAAATTCAAGAAGGTGACTTTAGAAACATGCTCAGATTGAAAGAGCTTGGAATCAATAATATGGGAGAGCTT
GTTTCTGTGGATAGGTATGCGCTGGACAACCTGCCTGAACTTACAAAGCTGGAAGCCACCAACAACCCAAAGCTGTCCT
ACATCCATCGTTTGGCATTTCGCAACGTCCCTGCCCTGGAGAGTTTGATGCTGAACAACAACGCCTTGAACGCTGTCTA
CCAAAAAACAGTGGAGTCCCTCCCAAACCTGCGTGAGATTAGCATCCACAGCAACCCCCTCCGGTGCGACTGTGTCATT
CACTGGATCAACTCAAACAAAACCAACATCCGCTTCATGGAACCTCTCTCCATGTTCTGTGCCATGCCTCCAGAGTACA
GAGGACAACAGGTAAAAGAAGTGCTAATACAGGATTCAAACGAGCAATGTCTTCCAATGATCTCTCACGAGACCTTTCC
AAATCACTTAAACTTGGACATTGGCATGACAGTATTTTTAGACTGCAGGGCCATGGCAGAACCCGAGCCAGAAATTTAC
TGGGTCACTCCCCTCGGAAATAAAGTAACTGTTGAAAGCCTCTCTGACAAATACAAGCTAAGCAGCGAAGGCACCTTGG
AAATCTCCAATATTCAGATTGAAGACTCTGGGAGGTACACCTGTGTTGCTCAGAACATAGAAGGAGCTGACACGAGGGT
CGCCACAATCCGGGTGAACGGAACACTTCTGGATGGCACCCAGGTTCTGAAAATCTTTGTGAAGCAAGCTGAATCGCAT
TCCATTTTAGTTTCTTGGAAAGTTAACTCCAATGTCATGACTTCCAATTTAAAGTGGTCATCAGCTACTATGAAGATTG
ACAACCCTCACATTACATACACCGCTCGGGTCCCAGTTGATGTACATGAATATAACCTCACGCATTTACAACCTTCTAC
AGATTATGAAGTGTGTCTCACTGTGTCCAACATCCACCAACAAACACAAAAGTCCTGTGTTAATGTTACAACAAAAAAT
GCAGCTTTTGCGCTGGATATTTCAGACCAAGAAACCAGCACTGCTCTGGCAGCGGTAATGGGATCGATGTTTGCTGTAA
TTAGCCTTGCCTCCATTTCTGTTTACATTGCAAAAAGATTTAAGAGAAAAAACTACCACCATTCACTGAAAAAATATAT
GCAAAAGACCTCCTCAATCCCCCTGAATGAGCTCTATCCTCCACTTATTAATCTCTGGGAAGGCGACAGCGATAAGGAC
AAGGATGGTTCTGCAGAGACCAAGCCAACCCAAGTTGACACATCCAGAAGCTATTACATGTGGTAACTCAGAGGATATT
TTGCTTCTGGTAGTAAGGAGCACAAAGACTTTTTTGCTTTATTCTGCAAAAATGAGAAGTTGAAGACCTTTGTATTTTT
GACTTTGCTAGTTTGTGGCAGAGTGGTGAGGACAGGTGGATATTTCAGAATTTTTTAGTATAGCGTATCGCAATTGTTT
GACACAAATGGCAGCTTCACCTAGCTTCCAGAGTTCTTTTTTTTTTCCCTTTCTCTCTCTCTTTTTTTTTTTTTTAGTT
ATTGTGCTAAACTTAATGCTGTTACTAACCACAGTGCTGAATAAAATTAATGAGAGGCTGGGGTTACCCTGTGATTCAA
AAGTAGCACAACCCCATTCTTCTGAAGCCATCAGTAGAGTACAGTATCTGCCAAGCTAGCATACAGTTTTGA | | Citation | Tossell K, Andreae LC, Cudmore C, Lang E, Muthukrishnan U, Lumsden A, Gilthorpe JD, Irving C.
Lrrn1 is required for formation of the midbrain-hindbrain boundary and organiser through regulation of affinity differences between midbrain and hindbrain cells in chick. Dev Biol. 2011 Apr 15;352(2):341-52.
| | Copyright | Copyright © 2011 Elsevier Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001097539.1). |
| | Data from NCBI Unigene EST Profile
Unigene ID: Gga.44964 |
MouseFrogFruit FlyZebra FinchZebrafish |
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