GEISHA - A Chicken Embryo Gene Expression Database
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COL9A1
collagen type IX alpha 1 chain

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolCOL9A1
Official Full Namecollagen type IX alpha 1 chain
CGNC ID11923
also known ascollagen alpha-1(IX) chain|alpha(IX) collagen-proteoglycan|cartilage alpha(IX) collagen|collagen, type IX, alpha 1, Collagen alpha-1(IX) chain precursor
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001100911
PolypeptideNP_001094381
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.16397
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1297ENSG00000112280MIM:120210MIM:120210
Mouse12839ENSMUSG00000026147All phenotypic alleles (1):Targeted, knock-out(1) MGI:88465
Xenopus4466316048227
Zebrafish406548, 100170785ENSDARG00000031483ZDB-GENE-040426-2410, ZDB-GENE-080721-25ZFIN:ZDB-GENE-040426-2410, ZFIN:ZDB-GENE-080721-25
Gene Ontology
Molecular Function
Biological Process
Cellular Componentcollagen
Links to other databases
Entrez Gene771873
Ensembl GeneENSGALG00000015970
KEGGgga:771873

Entry 1

GEISHA IdChEST859o21Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACTAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCCGT
TTGAGTCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCGAGAGAAAGTTGTGGTGAGCTCCCAGCCCGGATAAC
CAGAACGTGATTGAGAGAAGTCTTCCTGGTCCACCANGCCCCCCCAGTCAACANGGGCAACAGGAGTTCCTGGCATTGA
TGGCTTGATGGAAAGAGAGGACTAACGGCCCCCCGGTCC
CommentsNo specific expression detected at stage 12.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
Amnion
 
19-22
stage 22
stage 22
stage 22
Amnion
Eye
Notochord
Sclerotome
 

Entry 2

GEISHA IdCol9.Chimal-Monroy.2003Data SourcePublication
Complete cDNA Template Probeshow
AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA
CitationChimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301.
CopyrightReprinted with permission from Elsevier. Copyright © 2003 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001100911.1). There are several type IX collagen genes in chick. In the paper only type IX collagen is specified. The sequence shown here is for type 9A1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31
stage 31
Leg
Mesoderm
 

Entry 3

GEISHA IdColIX.DiasdaSilva.2007Data SourcePublication
Complete cDNA Template Probeshow
AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA
CitationDias da Silva MR, Tiffin N, Mima T, Mikawa T, Hyer J. FGF-mediated induction of ciliary body tissue in the chick eye. Dev Biol. 2007 Apr 1;304(1):272-85.
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
stage 26
stage 26
Eye
Retina
 

Entry 4

GEISHA IdCOLIX.Zhang.2003Data SourcePublication
Complete cDNA Template Probeshow
AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
CTCGTTAACAGGACTTATGACAGGGAACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAA
ACCAGCAGAGAAGATGAAAAGCAACTGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCA
GCTACCATCCAGCAACAATCAAGATTGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGA
TTGGCCAAGATGACTTGCCAGGCTTTGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCA
GAGAGTAGTGGGTTCTACTGCTCTACAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCA
ATATATTCCAATGGATTGCCTGATGAATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACT
GGACTATTTGGCAGATTCAGGATTCTTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGA
GTTTTCTTATAAAGGAGTGGATGGAAGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGG
CACAAGCTTATGATAAGTGTGGAAACAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAA
AACCAAAGGGGAAAATCAGTGTTGATGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTT
TGAAGTCCAGTGGATGCTGATTCACTGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCCCAGCCCGGATA
AGCCAGACAGTGATTGAGAGAGGTCTTCCTGGTCCACCAGGCCCCCCAGGTCCACCAGGGCCACCAGGAGTTCCTGGCA
TTGATGGCATCGATGGAGAGAGAGGACCTAACGGCCCCCCCGGTCCACCGGGTCCGGACGGCGACGCAGGCAAAGCGGG
ATCCCCGGGCCTGCCTGGAGAGCCAGGAGCTGATGGGTTAACAGGCCCTGATGGATCACCAGGTGCCACAGGACCGAAA
GGACAGAAGGGTGAGCCAGGACCTCCAGGTGCTCGTGGACTTCCGGGCAAGGGTCTTCTTGGACCACCTGGTCCAGCTG
GTGCTGCAGGACTTCCCGGTGAAGTAGGCCGTGCTGGCCCACCTGGTGATCCAGGAAAAAGGGGACCACCAGGACCACC
AGGACCACCAGGCCCTCGAGGAACAATTGGTCTGCAAGACGGTGACCCATTGTGTCCCAATGCTTGTCCACCTGGCCGC
CCAGGACATGCTGGCCTAATGGGAATGAAGGGACAGAAAGGCTCAAAAGGAGAATCTGGTGAACCAGGAAAACAAGGTT
ATAAGGGTGAAGAAGGGGATCAAGGTCCCATTGGTGAAGTTGGAGCTCAAGGCCCTCCAGGCATCCTAGGTATCAGAGG
TATAACTGGAATAACAGGACCTAAAGGTAACAAAGGAGCTCGTGGCCTTGATGGCGATCCTGGTCCCCAAGGTCTTCCT
GGTGCACCTGGGGATCAAGGACAGAGAGGTCCAGTGGGAGAAGAGGGTCCAAAGGGAGAAAGAGGTCCTCAAGGGACAA
GAGGAATAAACGGTCTCCCTGGGCCTAAAGGAGAGTCTGGCTTGCCAGGAGTTGATGGCCGGGAAGGTATCCCTGGAAT
GCCCGGAGCAAAGGGTGAACCAGGAAAACCTGGTACTCCAGGTGATACAGGACCTCCGGGATTGCCAGGTTTACCAGGC
TCTCCAGGTATGAAAGGGATTCCTGGCCCAAAGGGTAATAGAGGTCCTCCTGGAGTGCCGGGTTTGATGGGAAATTCTG
GCAAACCGGGTGAACAGGGACCAGAGGGGGAAGCAGGTCCAACGGGACCCCGGGGACCACCGGGTAGCAGAGGAGAGCC
AGGTCCTGCAGGTCCTCCAGGTTTACCAGGGAAATGGGGTCCCCAGGGTGACATAGGACTTCCTGGACTGCCAGGTCCT
CCAGGCCTACCTGGTGGTAAGGGTGACCGGGGTTCAGCGGGTGAACCAGGACCTAAGGGTGAACAAGGTGCACCTGGAT
CAGAAGGAGATGCAGGAGAAAAGGGTGACTTAGGTGATATGGGATTACCAGGTGCAAAGGGATCTGTTGGTAATCCTGG
AGACCCCGGTTCCCGTGGGCCGGAGGGAAGTCGGGGACTGCCTGGCATGGAAGGGCCACGAGGTGCACCTGGACCACGA
GGCTTGCAGGGTGAACAAGGTGCTCCAGGTCTGCCTGGCAGCCAAGGTCCAGCTGGAAAAGAACCAACTGATCAGCACA
TTAAGCAAGTCTGCATGAGAGTCATGCAAGAACAACTCTCTCAGCTGGCAGCCAGTCTTAGGCGGCCAGAATTTGGTGC
TCCAGGTCTTCCTGGCCGACCTGGACCTCCAGGTGCTCCAGGGCCTCCTGGGGAAAATGGTTTCCCAGGACAGCTTGGG
CCCCGTGGCTTGCCTGGCCTTAAAGGTCCTCCTGGTGAGATCGGTCGTAAAGGTCCAAAAGGTGAAGCAGGAGAAAGGG
GAGAAAGAGGATTTCCAGGCAGAGGAGTGAAAGGTCTCCCGGGACCGAGAGGTCTCCCAGGTGAACCAGGCAAACCCAG
CTATGGCAGGGAAGGCCGTGATGGTGTACGAGGTCCCCCTGGGGTGGCCGGTCAGCCTGGGATTCCTGGTCCTCCTGGC
CCTCCCGGCCCTCCTGGGTACTGCGAGCCGTCGTCTTGCCGAATGCAGGCTGGACAGAGAGCTGCTGGTAAGAACATGA
AAGGGCCATGAATGGGCAACGCAAAAGTCACAAAGCATTAGCATCAATTTACATCCTGCACAGACAGCTGAAAAAAAAA
AAACAAAAATAAGGAATGGAGGAGAAACACAACCTTGCACCCAAGATTTCAGTAAGGCATTTTGAACACAGTGGTTGTA
CATTGTTTGTAAAGGCACACTTGGCAACACGAGTTGGAACAATGGTGCTTGCAGAAATATACAAGAAGTCTTTTGGCTC
TTTCTCCCTTTGGAAAAATAAAGGCACTTGTTAATTAAGATTGTTTTTAAATAAAGAGTTGCCCTGAACATACTTTTAC
CCATACTTAATTTCTTTGTATGAAATGCAGTGACAGAACATGTCTTCAGACATAAAATTAAAAAAAAAAAGGAATAGTT
TATTGACTTCGGTTGTAGCTTTTTTTTTTTCTTCTTCTTCTTTTTGTGCTTGTAAAATAAAATCTAGAGCTCCCTTGAG
CAGATTACATCACTTCATATGCAGGCACTTCATTGCATGTACGTGCTGTACAGGATACGCTATAAGCCTCCCTCAGCTC
TTTGGTTCCATTGTAGAAACACAAGGGGAGACTGTTCTCACAGAAAGCTGCCGCTGCTGCCATCTTTTATGCTGTAAAT
CTGTACATGTACGATCACTGGGTTCTGGTGAATAAGCCACATGGAATAACCTCTTCATTTTCCACTTCAGTTTGTGTTG
CGTTCTTAATTTCAGATGAAGCCTATTCCAGTTTGACTCCTTCTATGTGAAATTAAAAAAAAGGCAGGAAGCCCCTGTC
AGGGGAATGTTGAGTCCCAGAAATATACAAGTTTTGTAGCCAAGGTTACATATTTTGAAGTCATGTCTGTGGTTGTACA
AAAACCCAAATAAATAACGTTTTAACTCCCTGGTTGCTTTTGTATGTATGTTTACATTCAGTACCAATAAACAGAACAG
CTAGAAGACCACCTGAGTTGCCTTTTTTAGAGAAACTCAATTTGTAGAGAAAAATATGCAATGTGGATATTTTGTTTCT
CTCTGTATAAATTAAAGTGTGTTTTTTGACTTA
CitationZhang D, Schwarz EM, Rosier RN, Zuscik MJ, Puzas JE, O'Keefe RJ.ALK2 functions as a BMP type I receptor and induces Indian hedgehog in chondrocytes during skeletal development. J Bone Miner Res. 2003 Sep; 18(9):1593-604
CopyrightCopyright © 1999 - 2018 John Wiley & Sons, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_001100911.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
Wing
(F) - control

Entry 5

GEISHA IdCOL9A1.Smith.2018Data SourcePublication
Complete cDNA Template Probeshow
CTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACTCTCGTTAACAGGACTTATGACAGGG
AACCAGAGAGTGTGAATATATACACCAAATATTCACATGTGAGACGTGAAGAAAACCAGCAGAGAAGATGAAAAGCAAC
TGGAAAATTACAGCTTTCTTGTATATGTGTAGTTTTCTGGGGTCTTTCATCTCAGCTACCATCCAGCAACAATCAAGAT
TGCCAGTCATTCTGGGTGCTCGTCAAAGAACTGATCTCTGCCCAACAATCAGGATTGGCCAAGATGACTTGCCAGGCTT
TGACCTGATTTCTCAGTTCCAGATAGAAAAAGCTGCTTCTCAAGGAATTGTCCAGAGAGTAGTGGGTTCTACTGCTCTA
CAAGTGGCTTATAAATTGGGACCCAATGTAGACTTCAGGATTCCAACCAGTGCAATATATTCCAATGGATTGCCTGATG
AATACTCCTTTCTTACTACTTTTCGGATGACTGGAGCCACACTTCAGAAATACTGGACTATTTGGCAGATTCAGGATTC
TTCAGGAAAAGAACAAGTTGGAGTGAATCTCAATGGTCCAATGAAAAGCGTTGAGTTTTCTTATAAAGGAGTGGATGGA
AGTCTCCAGACTGCATCATTTTTACATTTGCCTTTCTTGTTTGATTCCCAATGGCACAAGCTTATGATAAGTGTGGAAA
CAACCAGCGTTACACTTTTTATTGACTGTATAAAGGTAGAAACCCTAAACATAAAACCAAAGGGGAAAATCAGTGTTGA
TGGCTTCTCAGTGCTTGGAAGACTCAAAAATAATCCTCAAATTTCAGTTCCGTTTGAAGTCCAGTGGATGCTGATTCAC
TGCGATCCCCTGCGGCCCCAGAGAGAAGGTTGTGGTGAGCTCC
CitationJonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171.
CopyrightCopyright © 2018. Published by The Company of Biologists Ltd.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
Retina
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.16397

Mouse

EmageMGI:88465
EurexpressMGI:88465
MGI GXDMGI:88465

Frog

Xenbase6048227

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-2410, ZDB-GENE-080721-25
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