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COL9A1 The human orthologue of this gene is associated
Gene Summary Expression Transcript Levels Other Species Expression JBrowse Gene Official Symbol COL9A1 Official Full Name collagen type IX alpha 1 chain CGNC ID 11923 also known as collagen alpha-1(IX) chain|alpha(IX) collagen-proteoglycan|cartilage alpha(IX) collagen|collagen, type IX, alpha 1, Collagen alpha-1(IX) chain precursor gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Molecular Function Biological Process Cellular Component collagen
Links to other databases
Entry 1 GEISHA Id ChEST859o21 Data Source GEISHA ISH Analysis Forward cDNA Template Probe show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
Comments No specific expression detected at stage 12.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 13-18
stage 17
Amnion 19-22 stage 22
stage 22
stage 22
Amnion Eye Notochord Sclerotome
Entry 2 GEISHA Id Col9.Chimal-Monroy.2003 Data Source Publication Complete cDNA Template Probe show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
Citation Chimal-Monroy J, Rodriguez-Leon J, Montero JA, Gañan Y, Macias D, Merino R, Hurle JM. Analysis of the molecular cascade responsible for mesodermal limb chondrogenesis: Sox genes and BMP signaling. Dev Biol. 2003 May 15;257(2):292-301. Copyright Reprinted with permission from Elsevier.
Copyright © 2003 Elsevier B.V. All rights reserved.
Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001100911.1).
There are several type IX collagen genes in chick. In the paper only type IX collagen is specified. The sequence shown here is for type 9A1.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 31 stage 31
Leg Mesoderm
Entry 3 GEISHA Id ColIX.DiasdaSilva.2007 Data Source Publication Complete cDNA Template Probe show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
Citation Dias da Silva MR, Tiffin N, Mima T, Mikawa T, Hyer J. FGF-mediated induction of ciliary body tissue in the chick eye. Dev Biol. 2007 Apr 1;304(1):272-85. Copyright Reprinted with permission from Elsevier.
Copyright © 2007 Elsevier B.V. All rights reserved.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 25-26 stage 26
stage 26
stage 26
Eye Retina
Entry 4 GEISHA Id COLIX.Zhang.2003 Data Source Publication Complete cDNA Template Probe show AACCAACCCAGCAGCCTGCACCTCCCTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACT
Citation Zhang D, Schwarz EM, Rosier RN, Zuscik MJ, Puzas JE, O'Keefe RJ.ALK2 functions as a BMP type I receptor and induces Indian hedgehog in chondrocytes during skeletal development. J Bone Miner Res. 2003 Sep; 18(9):1593-604 Copyright Copyright © 1999 - 2018 John Wiley & Sons, Inc. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_001100911.1).
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-23 stage 23
Wing
Entry 5 GEISHA Id COL9A1.Smith.2018 Data Source Publication Complete cDNA Template Probe show CTCCCCGCTGAGTCCTGCGTGGGGCAGGAGGAGCATTCTGCACCCATTCATACTCTCGTTAACAGGACTTATGACAGGG
Citation Jonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171. Copyright Copyright © 2018. Published by The Company of Biologists Ltd. Comments The complete cDNA template sequence was obtained from the information from the publication as described in Smith et al. 2018.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 19-23 stage 23
Retina all
Data from NCBI Unigene EST ProfileGga.16397
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